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Open Access Highly Accessed Research article

Variable structure motifs for transcription factor binding sites

John E Reid1*, Kenneth J Evans2, Nigel Dyer3, Lorenz Wernisch1 and Sascha Ott4

Author Affiliations

1 MRC Biostatistics Unit, Institute of Public Health, Forvie Site, Robinson Way, Cambridge, CB2 0SR, UK

2 School of Crystallography, Birkbeck College, Malet Street, London, WC1E 7HX, UK

3 MOAC Doctoral Training Centre, Coventry House, University of Warwick, Coventry, CV4 7AL, UK

4 Systems Biology Centre, Coventry House, University of Warwick, Coventry, CV4 7AL, UK

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BMC Genomics 2010, 11:30  doi:10.1186/1471-2164-11-30

Published: 14 January 2010

Additional files

Additional file 1:

Supplementary materials. This document contains a full set of results, the technical details of the evaluations and a discussion of the motif finder RISOTTO.

Format: PDF Size: 3.4MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Data sets. A bzipped archive of the processed data sets used in the evaluations.

Format: BZ2 Size: 928KB Download file

Open Data

Additional file 3:

Application source code. The source code of the implementation of our method.

Format: BZ2 Size: 594KB Download file

Open Data