Table 1

Predicted amino acid sequences and length of the junctional diversity of the cDNAs. The classification of the TRBD, TRBJ and TRBC genes is indicated.

CDR3 sequence


CLONE

V

N(D)N

J

Ac.N

D segment

J segment

C segment

CDR3 length


pSTMos.01

ASSQ

A(GT)VI

SYEQYFGPGTKLTVV

FM993913

D1

J2.7

C2

14

pSTMos.02

ASSPT

NIAY

SYEQYFGPGTKLTVV

FM993914

--

J2.7

C2

14

pSTMos.03

ASSQ

SD(G)

EQYFGPGTKLTVV

FM993915

D3

J2.7

C3

10

pSTMos.04

ASSP

PP(GQ)V

NTEVFFGKGTRLTVV

FM993916

D1

J1.1

C1

14

pSTMos.05

ASSQG

R(D)L

SNNPLYFGGGTRLLVL

FM993917

D1

J2.3

C3

14

pSTMos.06

ASSQG

P

NTDPLYFGAGSKLTVL

FM993918

--

J2.2

C2

12

pSTMos.07

ASSR

VGTME(GQ)I

YNSOLQFGIGTRLTVT

FM993919

D1

J1.6

C1

18

pSTMos.08

ASSPT

E(GLWGG)R

YEQYFGPGTKLTVV

FM993920

D2

J2.7

C3

16

pSTMos.09

ASSQE

AR(LG)AR

YFGAGTRLSVL

FM993921

D3

J3.3

C3

12

pSTMos.11

ASSR

TALRP(LGE)HAL

YGELHFGPGTRLTVL

FM993922

D2

J2.1

C2

20

pSTMos.12

ASSPT

PT

YDERHFGPGTRLTVL

FM993923

--

J3.1

C3

12

pSTMos.13

ASSR

P(WGQG)D

GELHFGPGTRLTVL

FM993924

D3

J2.1

C2

14

pSTMos.14

ASS

G

SNNPLYFGGGTRLLVL

FM993925

--

J2.3

C2

10

pSTMos.17

ASSQD

M(G)ASA

AQLYFGAGSKLTVL

FM993926

D3

J3.2

C3

14

pSTMos.18

ASSQE

(GA)DH

NPLYFGGGTRLLVL

FM993927

D3

J2.3

C3

13

pSTMos.19

ASSQ

W

SNQAQHFGHGTRLAVL

FM993928

--

J1.5

C1

11

pSTMos.20

ASSPT

LR(G)IIPT

YEQYFGPGTKLTVV

FM993929

D1

J2.7

C3

16

pSTMos.21

ASS

RSR(WG)QD

SERYFGAGTRLTVT

FM993930

D3

J3.5

C3

14

pSTMos.22

ASSR

(WG)QD

SERYFGAGTRLTVT

FM993931

D3

J3.5

C3

12

pSTMos.23

ASSQ

APYG(TF)

SETQYFGPGTRLLVL

FM993932

D2

J3.4

C3

15

pSTMos.25

ASSPT

R(Q)GG

DPLYFGAGSKLTVL

FM993933

D1

J2.2

C3

13

pSSAR.01

ASSQ

SRR(D)VS

QTQYFGPGTRLLVL

FM993934

D1

J2.5

C2

14

pSSAR.02

ASSQG

HR(TA)K

NERLYFGNGTKLSVL

FM993935

D1

J1.4

C1

15

pSSAR.04

ASSQ

(AGGW)AL

SETQYFGPGTRLLVL

FM993936

D3

J3.4

C3

15

pSSAR.05

ASSK

LG(R)DILN

EQYFGPGTKLTVV

FM993937

D1

J2.7

C3

14

pSSAR.07

ASSQD

S(GTA)D

ERLYFGNGTKLSVL

FM993938

D1

J1.4

C1

14

pSSAR.08

ASS

(LG)

NERLYFGNGTKLSVL

FM993939

D3

J1.4

C1

10

pSSAR.10

ASSL

DI(R)PN

GELHFGPGTRLTVL

FM993940

D2

J2.1

C3

13

pSSAR.11

ASSP

K(RD)GY

NPLYFGGGTRLLVL

FM993941

D1

J2.3

C2

13

pSSAR.16

ASSQE

Q(Q)SRF

NNPLYFGGGTRLLVL

FM993942

D1

J2.3

C1

15

pSSAR.17

ASSQ

SRRD

SNQAQHFGHGTRLAIL

FM993943

--

J1.5

C1

14

pSSAR.19

ASSP

S(DFG)IG

NNPLYFGGGTRLLVL

FM993944

D2

J2.3

C2

15

pSSAR.23

ASS

LSTVD

SQSTQYFGAGTRLSVL

FM993945

--

J3.3

C3

14

pSSAR.24

ASSQD

RKQGG

NSPLQFGIGTRLTVT

FM993946

--

J1.6

C1

15

pSSAR.25

ASS

FFST(G)E

ETQYFGPGTRLLVL

FM993947

D3

J3.4

C3

13

pSSAR.28

ASSQ

(GQ)DRI

NPOLYFGGGTRLLVL

FM993948

D1

J2.3

C2

14

pSSAR.31

ASSP

DP(DSG)A

AQLYFGAGSKLTVL

FM993949

D1

J3.2

C3

14

pSSAR.32

ASSQD

IS(QR)A

TDPLYFGAGSKLTVL

FM993950

D1

J2.2

C3

15

pSMA.09

ASSP

(LWGG)D

NPLYFGGGTRLLVL

FM993951

D2

J2.3

C2

13

pSMA.10

ASSQD

(AG)F

NPLYFGGGTRLLVL

FM993952

D3

J2.3

C2

12

pSMA.41

ASSQ

KR(TAG)

ERHFGPGTRLTVL

FM993953

D1

J3.1

C3

12

pSMA.42

ASS

L(GQRG)G

YEQYFGPGTKLTVV

FM993954

D1

J2.7

C2

13

pSMA.46

ASSQD

I

ETQYFGPGTRLLVL

FM993955

--

J3.4

C2

10

pSMA.48

ASSQE

LT

YEQYFGPGTKLTVV

FM993956

--

J2.7

C3

11

pSMA.55

ASSR

(DL)C

NNPLYFGGGTRLLVL

FM993957

D2

J2.3

C3

12

pSMA.59

ASSS

V(S)D

GELHFGPGTRLTVL

FM993958

D1

J2.1

C2

11

pSMA.60

ASSP

AV(G)SD

NPLYFGGGTRLLVL

FM993959

D1

J2.3

C3

13

pSMA.62

ASSP

Q(TAG)E

DPLYFGAGSKLTVL

FM993960

D1

J2.2

C2

13

pSMA.65

ASSK

GR(TAG)P

SNNPLYFGGGTRLLVL

FM993961

D1

J2.3

C3

16

pSMA.66

ASSS

DR(GW)S

QTQYFGPGTRLLVL

FM993962

D3

J2.5

C2

13

pSMA.67

ASSK

TDF

YEQYFGPGTKLTVV

FM993963

--

J2.7

C2

11

pSMA.68

ASS

W(T)LNA

AQLYFGAGSKLTVL

FM993964

D1

J3.2

C2

12

pSMA.70

ASSR

E(GTG)L

YEQYFGPGTKLTVV

FM993965

D1

J2.7

C3

13

pSMA.71

ASSP

(GP)T

NTEVFFGKGTRLTVV

FM993966

D1

J1.1

C1

12

pSMA.73

ASSP

FL(DS)V

DERHFGPGTRLTVL

FM993967

D1

J3.1

C3

13

pSMA.74

ASS

R(H)QNI

TDTQYFGPGTRLSVL

FM993968

D1

J2.4

C2

13

pSMA.76

ASSP

(S)

SNNPLYFGGGTRLLVL

FM993969

D3

J2.3

C2

11

pSTA.01

ASSR

Y(SE)GD

EYHFGPGTKLTVV

FM993970

D1

J1.2

C3

12

pSTA.02

ASSQD

LV(GTA)R

YEYHFGPGTKLTVV

FM993971

D1

J1.2

C3

15

pSTA.03

ASS

FFST(G)E

ETQYFGPGTRLLVL

FM993972

D3

J3.4

C3

13

pSTA.04

ASS

DS(W)DVQS

TQYFGPGTRLLVL

FM993973

D3

J3.4

C3

13

pSTA.06

ASSQD

(R)D

YEYHFGPGTKLTVV

FM993974

D1

J1.2

C3

11

pSTA.08

ASSP

S(R)D

TEVFFGKGTRLTVV

FM993975

D1

J1.1

C3

11

pSTA.09

ASS

(LR)

ETQYFGPGTRLLVL

FM993976

D2

J3.4

C3

9

pSTA.11

ASSP

(GQR)PP

DTQYFGPGTRLSVL

FM993977

D1

J2.4

C2

13

pSTA.12

ASS

LS(GTRG)D

TQTQYFGPGTRLLVL

FM993978

D1

J2.5

C2

15

pSTA.13

ASSR

K(RG)H

SETQYFGPGTRLLVL

FM993979

D1

J3.4

C3

13

pSTA.15

ASS

IEKA

NPLYFGGGTRLLVL

FM993980

--

J2.3

C2

11

pSTA.24

ASSK

DL(AGG)VS

SETQYFGPGTRLLVL

FM993981

D3

J3.4

C2

16

pSTA.25

ASSL

ER(QR)

DERHFGPGTRLTVL

FM993982

D1

J3.1

C3

12

pSTA.26

ASSP

R(S)DK

GELHFGPGTRLTVL

FM993983

D1

J2.1

C1

12

pSTA.29

ASSP

RQ(T)GPFG

EYHFGPGTKLTVV

FM993984

D1

J1.2

C1

14


Di Tommaso et al. BMC Genomics 2010 11:3   doi:10.1186/1471-2164-11-3

Open Data