Table 3

Breakdown of failed variants by type for each species

Name

Type 1

Type 2

Type 3

Type 4

Type 5

Total number


Homo sapiens

132,037

494,262

37,456

3,359

13,768

680,882


Pan troglodytes

0

0

7

0

2,885

2,892


Pongo pygmaeus abelii

0

0

0

0

0

0


Mus musculus

155,456

299,923

0

0

25,691

481,070


Rattus norvegicus

1,475

482

1

0

216

2174


Canis familiaris

27,518

15,660

55

0

11,986

55,219


Bos taurus

9,679

103,072

0

0

490

113,241


Ornithorhynchus anatinus

0

4849

0

0

0

4,849


Gallus gallus

11,070

88,558

0

0

229,878

329,506


Danio rerio

0

0

0

0

44,841

44,841


Tetraodon nigroviridis

0

0

0

0

0

0


Taeniopygia guttata

0

0

0

0

0

0


Type 1: Variant maps to more than 3 different locations

Type 2: None of the variant alleles match the reference allele

Type 3: Variant has more than 3 different alleles

Type 4: Loci with no observed variant alleles in dbSNP

Type 5: Variant does not map to the genome

Chen et al. BMC Genomics 2010 11:293   doi:10.1186/1471-2164-11-293

Open Data