Table 2

List of Ensembl tables generated and dbSNP tables used

Ensembl tables generated

dbSNP tables used


source


variation

SNP, SNPAncestralAllele


variation synonym*

SubSNP, SNPSubSNPLink, ObsVariation


Batch, UniVariAllele


population/sample/population structure/sample synonym

PopClassCode, PopClass, PopLine


individual/sample/individual population/sample synonym

SubmittedIndividual, Individual PedigreeIndividual


allele

Allele, AlleleFreqBySsPop, SubSNP


flanking sequence

SubSNPSeq5, SubSNPSeq3, SNP


individual genotype

SubInd, ObsGenotype, SubmittedIndividual


population genotype

GtyFreqBySsPop, UniGty, Allele


variation feature

SNPContigLoc, ContigInfo


Chen et al. BMC Genomics 2010 11:293   doi:10.1186/1471-2164-11-293

Open Data