Table 2

List of Ensembl tables generated and dbSNP tables used

Ensembl tables generated

dbSNP tables used



SNP, SNPAncestralAllele

variation synonym*

SubSNP, SNPSubSNPLink, ObsVariation

Batch, UniVariAllele

population/sample/population structure/sample synonym

PopClassCode, PopClass, PopLine

individual/sample/individual population/sample synonym

SubmittedIndividual, Individual PedigreeIndividual


Allele, AlleleFreqBySsPop, SubSNP

flanking sequence

SubSNPSeq5, SubSNPSeq3, SNP

individual genotype

SubInd, ObsGenotype, SubmittedIndividual

population genotype

GtyFreqBySsPop, UniGty, Allele

variation feature

SNPContigLoc, ContigInfo

Chen et al. BMC Genomics 2010 11:293   doi:10.1186/1471-2164-11-293

Open Data