Table 1

Variation statistics for release 56, September 2009 http://sep2009.archive.ensembl.org/index.html webcite.

Name

Number of variants **

Genome size* (Assembly name)

Data source of variants


Homo sapiens

17,999,182

3,101,804,741 (GRCh37)

dbSNP; Resequencing reads


Pan troglodytes

1,520,077

3,350,417,645 (CHIMP2.1)

dbSNP


Pongo pygmaeus abelii

1,384,342

3,446,771,396 (PPYG2)

Assembly Reads


Mus musculus

14,888,174

2,716,965,481 (NCBIM37)

dbSNP; Resequencing reads


Rattus norvegicus

2,854,253

2,718,897,321 (RGSC3.4)

dbSNP; Resequencing reads


Canis familiaris

3,057,889

2,531,673,953 (BROADD2)

dbSNP


Bos taurus

2,057,872

2,918,205,644 (Btau_4.0)

dbSNP


Ornithorhynchus anatinus

1,207,507

2,073,148,626 (OANA5)

Assembly reads


Gallus gallus

2,960,841

1,100,480,441 (WASHUC2)

dbSNP


Danio rerio

617,481

1,481,257,891 (Zv8)

dbSNP


Tetraodon nigroviridis

903,588

358,618,246 (TETRAODON8)

Assembly reads


Taeniopygia guttata

4,745,545

1,233,169,488 (taeGut3.2.4)

Assembly reads


*Genome size refers to the length of the reference assembly.

**Distinct mapped variants

Chen et al. BMC Genomics 2010 11:293   doi:10.1186/1471-2164-11-293

Open Data