Table 7

Distribution of transcription factor binding sites across mosaic classes for sites less than 1500 bases from a TSS

Data Source

Factor

Q

Sites

Pair 2

Pair 7

Pair 9

Pair 14

Total

Note 1

Note 2

Note 3

Note 4

Note 5

Note 5

Note 5

Note 5

Note 6


HAIB-K562

GABP

0.77

1964

0.045

0.007

0.071

0.869

0.991

HAIB-K562

NRSF

0.15

292

0.091

0.091

0.192

0.567

0.940

HAIB-K562

SRF

0.24

87

0.197

0.035

0.087

0.609

0.928

YALE-GM128

NFKB

0.15

386

0.238

0.081

0.184

0.347

0.850

YALE-HCT116

TCF7L2

0.09

311

0.295

0.062

0.089

0.207

0.652

YALE-HepG2

SREBP1

0.43

2114

0.174

0.036

0.141

0.560

0.911

YALE-K562b

GATA1

0.11

356

0.256

0.132

0.201

0.276

0.865

YALE-K562b

TR4

0.65

350

0.145

0.040

0.158

0.599

0.943

YALE-K562b

ZNF263

0.20

1019

0.041

0.089

0.329

0.443

0.902

YALE-K562

cFos

0.06

223

0.242

0.137

0.176

0.133

0.688

YALE-K562

Max

0.23

723

0.121

0.029

0.136

0.592

0.877

YALE-K562

NF-E2

0.07

320

0.249

0.106

0.120

0.225

0.699

YALE-NT2D1

YY1

0.39

1163

0.119

0.029

0.107

0.696

0.951

YALE-K562-Ia30

STAT1

0.14

141

0.298

0.061

0.140

0.313

0.812

ORegAnno

CTCF

0.10

490

0.110

0.081

0.258

0.486

0.935

TRANSFAC

sp1

0.59

412

0.033

0.024

0.198

0.722

0.977

TRANSFAC

p53

0.05

29

0.166

0.062

0.194

0.365

0.787


Average of above

0.166

0.065

0.164

0.471

0.865


Genome proportions

0.134

0.071

0.042

0.009

0.256

Model proportions

0.134

0.069

0.042

0.009

0.255

Promoter region

0.170

0.069

0.128

0.233

0.600


Note 8) Column 3 gives the proportion, Q, of sites that are less than 1500 bases from a transcription start site, and column 4 gives the number of these sites. Other notes are as for Table 2.

Evans BMC Genomics 2010 11:286   doi:10.1186/1471-2164-11-286

Open Data