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Open Access Research article

Most transcription factor binding sites are in a few mosaic classes of the human genome

Kenneth J Evans

Author Affiliations

School of Crystallography, Birkbeck College, University of London, Malet Street, London, WC1E 7HX, UK

BMC Genomics 2010, 11:286  doi:10.1186/1471-2164-11-286

Published: 6 May 2010

Additional files

Additional file 1:

Additional file1is a text file giving the parameters of the final HMM. Fields are defined by comments in the file. Classes a and b of class pair n correspond to states 2n - 1 and 2n in the file.

Format: TXT Size: 31KB Download file

Open Data

Additional file 2:

Additional file2is a pdf file giving logos for the motifs found by MEME in our analysis and cross references to previous reports of these motifs.

Format: PDF Size: 68KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

Additional file3is a pdf file giving references and formulae for the EM-algorithm.

Format: PDF Size: 78KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data