Open Access Highly Accessed Research article

Regional regulation of transcription in the chicken genome

Haisheng Nie, Richard PMA Crooijmans, John WM Bastiaansen, Hendrik-Jan Megens and Martien AM Groenen*

Author Affiliations

Animal Breeding and Genomics Centre, Wageningen University, Marijkeweg 40, 6709 PG, Wageningen, the Netherlands

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BMC Genomics 2010, 11:28  doi:10.1186/1471-2164-11-28

Published: 14 January 2010

Additional files

Additional file 1:

Genomic location of RIDGEs and anti-RIDGEs. Genomic location of RIDGEs and anti-RIDGEs identified in the chicken genome in this study.

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Additional file 2:

Correlations of transcriptome maps in different tissues. All pairwise correlations between the tissue-specific transcriptome maps.

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Additional file 3:

Random permutation test. Random permutation test results for RIDGE identification with different window sizes.

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Additional file 4:

Positions of the synteny block in the chicken genome. Genomic positions of the ends of the synteny block on genome build WASHUC2.

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Additional file 5:

Evolutionary breaks within RIDGEs and anti-RIDGEs. Chi-square test of evolutionary break points within RIDGEs and anti-RIDGEs.

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Additional file 6:

GO enrichment analysis for genes in RIDGEs and anti-RIDGEs. Enriched GOBP terms for all genes located within RIDGEs and anti-RIDGEs. BY: adjusted p-values for the Benjamini & Yekutieli step-up FDR controlling procedure.

Format: XLS Size: 1MB Download file

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