Table 5

Characteristics of the CDS, introns, and intergenic regions of D. pulex, D. melanogaster, and A. mellifera.

Daphnia pulex

Drosophila melanogaster

Apis mellifera


CDS

introns

Intergenic

CDS

introns

intergenic

CDS

introns

intergenic


#sequences

120611

114156

36090

14817

47897

12371

31734

18117

23205

Min length

1

1

0

78

11

1

1

49

0

Max length

12685

48487

168617

69048

166135

345402

7242

34351

773536

Median length

147.0

76.0

1294.0

1152.0

75.0

1006.0

54.0

578.0

2986.0

Mean length

212.8

284.1

3659.1

1537.0

1080.0

5371.1

80.7

909.4

9007.8

SD lengths

279.0

1050.9

7082.0

1704.2

4197.7

13770.7

120.0

1245.9

22243.2

# positions

25665454

32436000

132056549

22774339

51727142

66445483

2561048

16475821

209026309

A

0.284

0.290

0.301

0.257

0.295

0.296

0.334

0.340

0.336

C

0.240

0.190

0.199

0.268

0.202

0.203

0.175

0.152

0.165

G

0.232

0.190

0.198

0.266

0.197

0.203

0.207

0.158

0.165

T

0.245

0.331

0.302

0.210

0.306

0.298

0.285

0.350

0.335

CG

0.472

0.380

0.397

0.534

0.399

0.406

0.381

0.310

0.329

corrected CpG

0.976

1.016

1.003

0.880

0.916

0.939

1.172

1.694

1.662

corrected CpNpG

1.088

1.082

1.063

1.086

1.068

1.099

1.005

0.962

0.959

A/T

1.157

0.875

0.999

1.225

0.967

0.995

1.174

0.970

1.000

C/G

1.034

0.997

1.002

1.005

1.023

1.001

0.844

0.963

1.000


Mayer et al. BMC Genomics 2010 11:277   doi:10.1186/1471-2164-11-277

Open Data