Table 4

Repeat characteristics of TR classes with a unit size of 1 to 50 bp for Daphnia pulex, Drosophila melanogaster, and Apis mellifera.

Daphnia pulex

Drosophila melanogaster

Apis mellifera


repeat class [bp]

total counts

mean TR length [bp]

sd

longest TR [bp]

density [bp/Mbp]

total counts

mean TR length [bp]

sd

longest TR [bp]

density [bp/Mbp]

total counts

mean TR length [bp]

sd

longest TR [bp]

density [bp/Mbp]


1

17161

16.2

4.1

100

1747.1

15701

17.0

10.1

974

1639.0

54104

17.8

6.0

335

4166.4

2

16104

18.6

5.5

117

1884.8

14511

22.0

13.3

820

1961.6

69036

26.3

17.1

630

7860.8

3

21458

19.7

6.4

174

2662.0

9622

26.1

31.0

710

1543.7

28005

26.3

24.1

932

3181.9

4

4630

21.7

11.2

336

632.9

4770

32.1

65.3

863

939.2

16755

24.1

18.0

943

1742.1

5

3476

24.5

20.2

379

534.8

5984

89.3

189.5

9308

3253.7

11528

26.5

29.6

1348

1313.4

6

2382

27.8

22.9

536

418.0

8220

30.6

52.8

1969

1538.1

8673

27.0

55.0

4290

1008.6

7

1664

23.5

8.9

239

246.4

5133

41.3

73.0

973

1291.0

7810

27.1

16.7

593

914.7

8

1591

24.5

17.0

582

245.3

3204

43.4

89.7

1540

846.5

8585

27.0

15.4

774

1003.3

9

2213

27.4

10.0

191

380.1

2386

39.6

93.9

3013

577.7

8557

28.5

16.8

496

1054.9

10

2041

45.2

89.2

1459

572.3

1535

50.2

86.6

929

473.8

9572

32.7

62.9

2548

1351.8

11

1336

27.8

8.2

161

234.0

2776

369.6

953.0

33316

6269.0

7884

29.3

14.0

592

997.5

12

1814

35.7

41.9

906

404.9

2310

161.4

628.0

23884

2272.4

8313

31.2

20.1

1023

1120.6

13

786

35.3

20.3

234

174.7

530

34.6

34.7

567

113.0

4001

34.4

22.2

595

596.0

14

459

37.9

19.2

247

109.7

419

57.1

59.9

589

147.3

2383

37.4

19.7

385

385.0

15

780

50.9

35.3

491

249.8

415

63.5

70.7

607

161.1

1421

48.8

69.0

1084

299.4

16

177

68.9

96.9

915

76.9

179

56.5

51.6

538

62.2

852

49.2

47.3

785

181.2

17

389

270.2

386.6

3259

650.4

92

60.1

78.2

632

34.1

558

50.6

50.2

850

121.9

18

366

85.9

158.0

2317

196.1

212

68.0

100.7

1311

88.5

509

67.1

89.4

1124

147.1

19

284

59.4

45.9

605

106.1

110

63.5

76.3

538

43.0

309

58.1

43.3

673

77.7

20

155

85.2

81.6

663

83.2

89

98.7

127.4

684

54.1

279

90.7

204.1

2150

109.5

21

363

70.9

33.4

401

162.3

89

204.7

577.3

5404

111.7

221

78.7

71.8

587

75.2

22

91

72.3

47.9

298

40.7

45

443.2

1638.9

11089

122.8

150

72.8

69.5

576

47.3

23

77

97.7

136.1

1192

47.3

175

553.9

838.9

6227

553.7

118

108.7

155.0

1134

55.5

24

350

152.9

139.0

931

337.0

130

110.7

117.4

699

88.4

169

127.7

254.0

2621

93.4

25

43

83.4

74.0

437

22.6

23

248.4

219.9

747

31.1

84

131.0

275.9

2531

47.6

26

62

95.7

74.7

499

37.4

45

125.0

164.5

842

34.7

214

226.1

212.0

1673

200.9

27

128

107.9

69.1

475

87.0

85

93.9

59.1

416

46.7

98

138.6

134.3

700

58.8

28

42

84.6

32.1

231

22.4

46

134.1

129.5

551

38.0

106

167.0

191.0

1261

75.7

29

29

85.1

37.1

201

15.6

14

163.7

183.3

680

14.1

64

144.4

146.0

1052

40.0

30

119

152.5

161.9

1141

110.5

89

146.9

134.2

1085

80.5

136

150.7

194.4

1995

87.5

31

95

94.6

36.0

261

56.6

55

581.4

503.9

2320

181.7

44

167.0

154.4

879

31.8

32

70

93.1

51.7

330

39.9

56

196.7

174.1

744

67.9

56

148.3

133.6

769

35.9

33

85

152.2

159.2

1349

80.9

112

457.9

2864.8

30381

315.8

69

146.4

93.7

487

43.6

34

61

210.2

256.8

1552

80.8

51

444.4

607.3

2944

139.6

77

161.8

125.8

862

53.9

35

94

140.0

106.1

675

82.9

25

849.3

1816.1

9031

130.8

81

164.5

121.1

760

57.2

36

81

155.4

94.6

447

79.3

61

231.1

129.7

569

85.3

360

183.8

94.3

805

285.9

37

25

156.7

163.8

880

24.7

21

150.3

70.2

347

19.4

60

173.1

112.1

557

45.0

38

55

112.7

29.1

260

39.1

20

189.8

162.6

638

23.4

47

137.5

74.6

428

28.0

39

39

153.7

115.3

674

37.8

69

361.5

1153.3

9681

153.5

54

162.5

133.9

816

38.0

40

14

105.4

38.1

234

9.3

10

322.4

277.9

972

19.9

47

231.0

306.6

1984

47.0

41

31

105.8

21.6

158

20.7

3

247.7

230.3

513

4.6

38

160.3

108.1

683

26.3

42

70

139.9

54.9

428

61.6

26

189.9

205.4

980

30.4

32

186.1

158.6

862

25.8

43

38

130.9

35.7

203

31.4

10

364.4

339.9

1045

22.5

17

236.7

218.7

969

17.4

44

10

183.0

95.8

344

11.5

4

915.3

1379.3

2979

22.6

34

200.8

205.5

1288

29.6

45

56

208.9

241.5

1442

73.8

32

409.6

630.3

3489

80.7

41

243.3

288.7

1875

43.2

46

11

363.9

701.5

2475

25.2

12

2057.9

3322.3

11248

152.1

40

180.0

96.8

524

31.2

47

12

313.5

339.9

1263

23.7

12

619.6

611.0

1987

36.0

20

233.1

152.4

561

20.2

48

39

335.3

225.0

857

82.4

12

1126.3

2226.0

7791

83.3

19

253.2

148.5

615

20.8

49

15

218.5

155.7

620

20.7

19

174.5

151.6

700

20.4

32

227.0

204.5

926

30.6

50

37

172.1

60.3

350

40.1

10

245.5

129.0

469

15.1

40

252.0

219.2

1200

43.6


total

81508

26.2

3259

13254

79559

53.6

33316

24199

251702

27.0

4290

28698


Mayer et al. BMC Genomics 2010 11:277   doi:10.1186/1471-2164-11-277

Open Data