Research article
Genomic organization of eukaryotic tRNAs
1 Bioinformatics Group, Department of Computer Science and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstraße 16-18, D-04107, Leipzig, Germany
2 Department of Biology, Universidad Nacional de Colombia. Carrera45 # 26-85 - Edificio Uriel Gutiérrez, Bogotá D.C., Colombia
3 Genedata AG Maulbeerstrasse 46 CH 4016 Basel, Switzerland
4 Biostatistics and Bioinformatics unit, Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain
5 Max Planck Institute for Mathematics in the Sciences, Inselstraß 22 D-04103 Leipzig, Germany
6 Fraunhofer Institute for Cell Therapy and Immunology, Perlickstraße 1, D-04103 Leipzig, Germany
7 Santa Fe Institute, 1399 Hyde Park Rd, Santa Fe, NM 87501, USA
8 Institute for Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Wien, Austria
BMC Genomics 2010, 11:270 doi:10.1186/1471-2164-11-270
Published: 28 April 2010Additional files
Additional file 1:
Genomic Distribution of tDNAs. Comprehensive overview of the genomic distribution of tRNA genes and tRNA pseudogenes as described in Fig. 1.
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Additional file 2:
Count of tDNAs and tDNA pair configurations. List of total tDNA predictions including P-values and counts of tDNA pair configurations from the empirical data and simulations.
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Additional file 3:
Co-occurrences of tDNAs. Comprehensive summary of co-occurrence data for tDNAs as described in Fig. 5.
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Additional file 4:
Syntenic conservation of Drosophila tDNAs. List of percentage distribution of tDNA synteny in the genus Drosophila.
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Additional file 5:
Sequence conservation of nematode tDNA-Ala. Neighbor-joining tree showing that tDNAs usually have identical sequences when they are syntenically conserved, while tRNAs with the same anticodon can exhibit small sequence variations within each species.
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Additional file 6:
Genome versions used in this survey. List of the genome versions and website from which they were downloaded.
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Additional file 7:
Proportions of tDNA pairs. Summary of the Fisher Test statistic for comparing proportion of pairs configurations.
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