Additional file 8.
Simulation results from the sliding-window haplotype analysis of cultivars in Group 1 on chromosome 1. Changes in the haplotype diversity index are based on 2-, 5-, 10-, and 15-SNP sliding windows on the assumption of a mean distance of 200 kb between adjacent SNP pairs in the rice genome. On this basis, the window sizes of the 2-, 5-, 10-, and 15-SNP sliding windows were 0.4, 1, 2, and 3 Mb respectively.
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Yamamoto et al. BMC Genomics 2010 11:267 doi:10.1186/1471-2164-11-267