Table 3 |
||||||||
|
Characteristics of the nfs locus. |
||||||||
|
Mxan |
gene |
induction |
amino acids |
product |
motifs |
signal seq. |
localization |
|
|
|
||||||||
|
micro-array |
RT-PCR |
|||||||
|
|
||||||||
|
3371 |
nfsA |
153 |
4096 |
294 |
hypothetical |
+ |
OM/C/P |
|
|
3372 |
nfsB |
17 |
442 |
hypothetical |
+ |
OM |
||
|
3373 |
nfsC |
78 |
512 |
hypothetical |
+ |
OM |
||
|
3374 |
nfsD |
55 |
32768 |
1202* |
TPR repeat |
TM, TPR x3 |
- |
C/P |
|
3375 |
nfsE |
51 |
499 |
putative A-motility protein |
TPR x6 |
+ (II) |
P |
|
|
3376 |
nfsF |
87 |
94* |
hypothetical |
+ |
C/P |
||
|
3377 |
nfsG |
64 |
682 |
FHA/TonB domain- |
FHA |
- |
P |
|
|
3378 |
nfsH |
36 |
4096 |
200 |
hypothetical |
+ |
OM |
|
|
|
||||||||
|
Bioinformatic analysis of the nfs locus. Motifs were predicted by SMART [87,88]. TM, transmembrane region; TPR, tetratrico peptide repeat domain involved in mediation of protein-protein interactions [69]; FHA, Fork head-associated domain involved in binding to phospho-threonine containing proteins [70]. Localization was predicted by CELLO [74]. OM: outer membrane; C, cytoplasmic; P, periplasmic. * based on amended start codon positions (see text). |
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|
Müller et al. BMC Genomics 2010 11:264 doi:10.1186/1471-2164-11-264 |
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