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Open Access Highly Accessed Research article

Small RNA expression and strain specificity in the rat

Sam EV Linsen, Elzo de Wit, Ewart de Bruijn and Edwin Cuppen*

Author Affiliations

Hubrecht Institute-KNAW & University Medical Center Utrecht, Cancer Genomics Center, Utrecht, The Netherlands

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BMC Genomics 2010, 11:249  doi:10.1186/1471-2164-11-249

Published: 19 April 2010

Additional files

Additional file 1:

Table S1. Read statistics.

Format: XLS Size: 18KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Figure S1. Small RNA read description.

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Additional file 3:

File S1. fastafile of all identified miRNAs in 6 tissues from the SHR and BN-Lx rat.

Format: TXT Size: 313KB Download file

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Additional file 4:

File S2. GFF of all known pre-miRNAs.

Format: TXT Size: 18KB Download file

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Additional file 5:

File S3. GFF of all homologous pre-miRNAs.

Format: TXT Size: 2KB Download file

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Additional file 6:

File S4. GFF of all novel pre-miRNAs.

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Additional file 7:

File S5. fastafile of miRNAs without known seeds in vertebrates.

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Additional file 8:

Figure S2. correlation between 6 datasets.

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Additional file 9:

Figure S3. miRNAs derived from all known loci in the rat.

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Additional file 10:

Table S2. Optimization qPCR for mir-377.

Format: XLS Size: 23KB Download file

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Additional file 11:

Table S3. Strain specific and avoidant miRNAs in six rat tissues.

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Additional file 12:

Figure S4. evolving miRNAs in the rat mir-463 cluster.

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Additional file 13:

Figure S5. pachytene piRNA clusters on the rat genome.

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Additional file 14:

Table S4. piRNA clusters.

Format: TXT Size: 10KB Download file

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