Table 4

Putative functions of differentially expressed genes

Contig name

Gene product

Putative function

Log mean fold changes

AL3T/AL1T

AL9T/AL1T

Tox/Nontox


Higher expressed in toxic strains

Amin_34h03r

putative small nuclear ribonucleoprotein polypeptide E

gene expression

1.7

2.4

2.0

Amin_36k19f

translation elongation factor-like protein

gene expression

24.4

25.8

25.1

Amin_44h09f

glycyl-tRNA synthetase

gene expression

4.3

4.6

4.5

Amin_56k21r

probable translation initiation factor E4

gene expression

22.6

28.5

25.4

Amin_65d02r

putative Ubiquitin-like domain-containing CTD phosphatase 1

gene expression

3.1

2.3

2.7

Amin_75e04r

putative helicase

gene expression

24.3

26.1

25.2

Amin_48i15f

putative helicase

gene expression

26.9

44.8

34.7

Amin_56g23f

putative Alpha-L-fucosidase 1

protein glycosylation

1.8

5.5

3.2

Amin_95c08r

sialyltransferase

protein glycosylation

20.3

23.5

21.9

Amin_87p16r

casein family protein kinase

signal transduction

9.7

13.0

11.2

Amin_98a08r

endonuclease/exonuclease/phosphatase family protein

intracellular signalling

3.6

4.8

4.2

Amin_63e03r

hypothetical protein similar to Sentrin-specific protease 8

cell cycle control

3.7

3.2

3.4

Amin_68d07f

rrm family protein similar to mei2

cell cycle control

2.9

2.5

2.7

Amin_63c06r

RNA-binding protein similar to mei2

cell cycle control

1.9

2.6

2.2

Amin_53e04r

chlorophyll a-c binding protein

chloroplast

5.5

4.9

5.2

Amin_81i24r

translation elongation factor P

organellar translation

37.4

45.2

41.1

Amin_97a05r

putative mitochondrial import receptor subunit tom40

mitochondrial

4.6

5.8

5.1

Amin_70g03r

ferrochelatase

mitochondrial

3.0

2.8

2.9

Amin_40e21r

putative hydrolase

hydrolytic enzyme

5.5

3.1

4.1

Amin_82n24r

phospholipase/carboxylesterase family protein

hydrolytic enzyme

7.2

8.8

8.0

Amin_46a02r

Abhydrolase domain-containing protein

hydrolytic enzyme

5.6

4.0

4.7

Amin_95b07r

putative sulfatase, similar to Ats family arylsulfatases

hydrolytic enzyme

3.2

4.2

3.7

Amin_79g11r

hypothetical protein similar to various hydrolytic enzymes

hydrolytic enzyme

2.1

3.4

2.7

Amin_62h07r

hypothetical protein similar to glutathione S-transferase

detoxification

4.7

7.0

5.8

Amin_12c01r

aminotransferase, class I or II

Amino-transferase

2.1

3.0

2.5

Amin_93i12r

hypothetical protein similar to branched-chain-amino-acid aminotransferase

Amino-transferase

2.5

4.2

3.3

Amin_46c04r

hypothetical protein similar to Iron/ascorbate family oxidoreductases

Oxido-reductase

7.9

8.8

8.3

Amin_83a03f2

galactose-1-phosphate uridylyltransferase

sugar metabolism

5.2

8.6

6.7

Amin_44a04r

putative steroid oxidoreductase superfamily member

secondary metabolites

3.2

4.0

3.6

Amin_53f01f

putative lipolytic enzyme, G-D-S-L family

lipid metabolism

3.5

2.3

2.8

Amin_17d04f

putative CorA-like Mg2+ transporter protein

metal ion transport

3.5

3.7

3.6

Amin_59d02r

GFA family protein

putative carbon-sulphur lyase

20.4

22.8

21.6

Higher expressed in non-toxic strain AL1T

Amin_30a05r

cyclin-dependent kinases regulatory subunit 1

signal transduction

-3.9

-2.9

-3.3

Amin_74g08f

dynein heavy chain family protein

intracellular transport

-5.5

-4.3

-4.9

Amin_44h03r

fibronectin type III domain-containing protein

putatively involved in signalling

-9.2

-11.3

-10.2

Amin_09b02f

glutaredoxin family protein

DNA nucleotide synthesis

-4.7

-3.2

-3.9

Amin_89h11r

hypothetical protein containing a putative 'Cold-shock' DNA-binding domain

stress response

-2.4

-3.2

-2.8

Amin_101h04r

inorganic H+ pyrophosphatase, 3'-region.

proton pump

-3.0

-1.9

-2.4

Amin_16h04r

peptide chain release factor 1

translation

-8.5

-7.5

-8.0

Amin_42k04f

hypothetical protein similar to taurine catabolism dioxygenase TauD

putative dioxygenase

-2.7

-29.7

-9.0


Yang et al. BMC Genomics 2010 11:248   doi:10.1186/1471-2164-11-248

Open Data