Table 2

Potential novel miRNA genes from sweet orange

miRNA ID

Sequences (5'-3')

WT counta

MT counta

Fold change

Precursor Unigene ID

Start, end

miRNA star


csi-novel-01

UUUUUCGGCAACAUGAUUUCU

2.8

0.0

EY671768

607, 764

Yes

csi-novel-02

UGGAGGCAGCGGUUCAUCGAUC

4.5

3.3

1.4

EY681703

286,417

Yes

csi-novel-03

UAGAUAAAGAUGAGAGAAAAA

220.1

1248.5

5.7

EY683731

19,166

Yes

csi-novel-04

UUCAAGAAAUCUGUGGGAAG

8.9

0.0

EY714194

255, 397

Yes

csi-novel-05

UGAAGGGCCUUUCUAGAGCAC

90.5

29.6

3.1

CN182895

123, 285

Yes

csi-novel-06

UUCCCUAGUCCCCCUAUUCCUA

11.2

1.5

7.5

CX051199

168, 263

Yes

csi-novel-07

GGAAUGUUGUCUGGCUCGAGG

12.3

4.8

2.6

EY672989

141, 318

Yes

csi-novel-08

AGUGGGAGCGUGGGGUAAGAAG

287.1

369.1

1.3

EY676411

137, 282

Yes

csi-novel-09

UUGAGUUCUGCAAGCCGUCGA

0.0

2.7

EY712260

398, 498

Yes

csi-novel-10

AGGUCAUCUUGCAGCUUCAAU

27.9

4.5

6.2

EY739655

272, 634

Yes

csi-novel-11

UGGACAGAGAAAUCACGGUCA

591.5

132.7

4.5

TC19570

105, 191

Yes

csi-novel-12

GCAGCGUCCUCAAGAUUCACA

15.1

4.5

3.4

TC23189

300, 444

Yes


a count was normalized as transcripts per million (TPM).

Xu et al. BMC Genomics 2010 11:246   doi:10.1186/1471-2164-11-246

Open Data