Research article
Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii
1 Departamento de Ciências Biológicas, Instituto de Ciências Exatas e Biológicas, Campus Morro do Cruzeiro, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil
2 Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil
3 Department of Plant Pathology, University of Florida, Gainesville, FL, USA
4 Department of Plant Pathology, Physiology and Weed Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
5 Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal, UNESP - Univ. Estadual Paulista, Jaboticabal, SP, Brazil
6 Departamento de Ciências Biológicas, Campus de Diadema, Universidade Federal de São Paulo, São Paulo, SP, Brazil
7 Departamento de Melhoramento e Nutrição Animal, Faculdade de Medicina Veterinária e Zootecnia de Botucatu, UNESP - Univ. Estadual Paulista, SP, Brazil
8 Departamento de Engenharia Florestal, Centro de Ciências Agroveterinárias, Universidade do Estado de Santa Catarina, Lages, SC, Brazil
9 Allelyx Applied Genomics, Campinas, SP, Brazil
10 Núcleo de apoio à pesquisa em microscopia eletrônica aplicada à pesquisa agropecuária, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, SP, Brazil
11 Laboratório de Bacteriologia Vegetal, Instituto Biológico Campinas, Campinas, SP, Brazil
12 Escola de Artes, Ciências, e Humanidades, Universidade de São Paulo, São Paulo, SP, Brazil
13 Faculdade de Computação, Universidade Federal do Mato Grosso do Sul, Campo Grande, MS, Brazil
14 Laboratório de Bioinformática, Instituto de Computação, Universidade Estadual de Campinas, Campinas, SP, Brazil
15 Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
16 Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
17 Instituto Agronômico do Paraná, Londrina, PR, Brazil
18 Institute of Food and Agricultural Sciences, Mid-Florida Research & Education Center, University of Florida, Gainesville, FL, USA
19 Department of Plant & Microbial Biology, University of California, Berkeley, Berkeley, CA, USA
BMC Genomics 2010, 11:238 doi:10.1186/1471-2164-11-238
Published: 13 April 2010Additional files
Additional file 1:
Figure S1: whole chromosome alignments of XauB and XauC scaffolds against XAC.
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Additional file 2:
Table S2: genes shared by XAC, XauB, and XauC but that are not found in other fully sequenced Xanthomonas and Xylella genomes.
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Additional file 3:
Table S3: List of XAC-specific regions.
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Additional file 4:
Figure S4: gene diagrams showing the contents of all 25 XAC-specific regions.
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Additional file 5:
Figure S5: PCR results for gene xacPNP.
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Additional file 6:
Table S6: names, organisms, locus tags, and accession numbers for the nucleotide sequences used to build the pth gene phylogeny (Fig.3).
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Additional file 7:
Figure S7: topology of clade in Fig.3with bootstrap values.
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