Table 4 |
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|
Transcription factors found in the nrFLcDNAs |
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|
Family |
IPR entry |
Description of IPR entry |
No. of tomato nrFLcDNAs |
|
|
|||
|
G2-like |
IPR006447 |
Myb-like, SHAQKYF class |
52a |
|
MYB |
IPR015495 |
Myb transcription factor |
50a |
|
Homeobox |
IPR001356 |
Homeobox |
40 |
|
C2H2 |
IPR007087 |
Zinc finger, C2H2-type |
31 |
|
bHLH |
IPR011598 |
Helix-loop-helix DNA-binding |
22 |
|
CCAAT-HAP5, HAP3, and HAP2 |
IPR003958 |
Transcription factor CBF/NF-Y/archaeal histone |
19 |
|
PHD |
IPR001965 |
Zinc finger, PHD-type |
18 |
|
AP2-EREBP |
IPR001471 |
Pathogenesis-related transcriptional factor and ERF, DNA-binding |
18 |
|
WRKY |
IPR003657 |
DNA-binding WRKY |
18 |
|
bZIP |
IPR011616 |
bZIP transcription factor, bZIP-1 |
17 |
|
HSF |
IPR000232 |
Heat shock factor (HSF)-type, DNA-binding |
15 |
|
C3H |
IPR000571 |
Zinc finger, CCCH-type |
13 |
|
MADS |
IPR002100 |
Transcription factor, MADS-box |
11 |
|
MYB-related |
IPR010588 |
Myb-related protein P, C-terminal |
11 |
|
C2C2-YABBY |
IPR006780 |
YABBY protein |
11b |
|
ARID |
IPR009071 |
High mobility group box |
11b |
|
NAC |
IPR003441 |
No apical meristem (NAM) protein |
10 |
|
TCP |
IPR005333 |
Transcription factor, TCP |
8 |
|
GRAS |
IPR005202 |
GRAS transcription factor |
7 |
|
C2C2-GATA |
IPR000679 |
Zinc finger, GATA-type |
6 |
|
ABI3VP1 |
IPR003340 |
Transcriptional factor B3 |
6 |
|
EIL |
IPR006957 |
Ethylene insensitive 3 |
3 |
|
BBR/BPC |
IPR010409 |
GAGA binding-like |
2 |
|
TUB |
IPR000007 |
Tubby, C-terminal |
2 |
|
C2C2-Dof |
IPR003851 |
Zinc finger, Dof-type |
2 |
|
C2C2-CO-like |
IPR000315 |
Zinc finger, B-box, "IPR002926 Zinc finger, CONSTANS-type" was deleted from IPR entry. |
2 |
|
ZF-HD |
IPR006456 |
ZF-HD homeobox protein Cys/His-rich dimerisation region |
2 |
|
GeBP |
IPR007592 |
Protein of unknown function DUF573 |
2 |
|
ARR-B |
IPR001789 |
Response regulator receiver |
2 |
|
NLP |
IPR003035 |
Plant regulator RWP-RK |
2 |
|
BZR |
IPR008540 |
BZR1, transcriptional repressor |
1 |
|
JUMONJI |
IPR013129 |
Transcription factor jumonji |
1 |
|
ZIM |
IPR007853 |
Zinc finger, Zim17-type |
1 |
|
Whirly |
IPR009044 |
ssDNA-binding transcriptional regulator |
1 |
|
|
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|
aMember nrFLcDNAs of MYB were completely overlapped with those of G2-like. bMember nrFLcDNAs of C2C2-YABBY and ARID completely overlapped. |
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|
Aoki et al. BMC Genomics 2010 11:210 doi:10.1186/1471-2164-11-210 |
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