Table 1

SNP counts within target genes in significant modules

Total bp checked

Total SNPs

% of bp

Non-synonymous coding SNPs

% of SNPs found


Magenta

21,218,367

7,128

0.03

59

0.83

Pink

8,637,477

8,193

0.09

19

0.23

Red

15,909,861

10,464

0.07

49

0.47


The first column refers to the number of base pairs checked within a module. To include possible regulatory regions, a margin of 10 kb before and after each gene was used. The second column contains the total number of SNPs found, and the third column shows this number relative to the number of base pairs checked. Non-synonymous coding SNPs are represented in column four, and column five shows the percentage of non-synonymous coding SNPs compared to the total number of SNPs found.

de Jong et al. BMC Genomics 2010 11:20   doi:10.1186/1471-2164-11-20

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