Additional file 2.

Content of the Magenta, Pink, and Red modules. Tables contain probes in Magenta (table 1), Pink (table 2) and Red (table 3) modules. Illumina probe ID, Gene Symbol, Chromosome and expression differences AJ versus C57BL6/J and hippocampus versus amygdala are given. Asterisks in the Probe ID column denote probes containing a known SNP between A/J and C57BL/6J. The last column denotes the cis-regulated genes according to the WTCCC Heterogeneous stock database http://gscan.well.ox.ac.uk/ webcite, with and without known SNPs between included strains. Expression data is transformed (variance stabilizing method) and normalized (robust spline) yielding values comparable to LOG2 values.

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de Jong et al. BMC Genomics 2010 11:20   doi:10.1186/1471-2164-11-20