Additional file 4.
ClustalW alignment of the CENP-A associated repeats recovered by immunoprecipitation from chromosome 1 (IP Chr1). Above each set of sequences, the nucleotide positions where a significant subset of repeats share the same DVNs are indicated. ClustalW alignment was performed with all sequenced repeats, including those in which a DVN was only shared by two repeats. These DVN positions are not included here for more clarity.
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Pironon et al. BMC Genomics 2010 11:195 doi:10.1186/1471-2164-11-195