The common portion of the repeats of both BX248407 and the corresponding locus of the GM 13139 homologue were ClustalW aligned simultaneously. In the first column, those from GM 13139 are shaded in yellow. Overall, this figure shows that the repeats of the two homologues are indeed quite different in their DVN distribution and combination into haplotypes.
Pironon et al. BMC Genomics 2010 11:195 doi:10.1186/1471-2164-11-195