Table 4

Genes that are involved in the photorespiratory pathway and that are differentially expressed between the glu1-2 mutant and the wild-type mutant

EC #

Enzyme/protein

Abbreviation

Gene ID

log2 root

log2 leaf


3.1.3.18

phosphoglycolate phosphatase

putative PGLP

AtPGLP1

AT5G36790

AT5G36700

0.674

-0.658


1.1.3.15

glycolate oxidase

GOX

AT3G14415

AT3G14420

0.655

-0.464


2.6.1.2/2.6.1.4

glutamate:glyoxylate aminotransferase

GGAT2

AT1G70580

-0.680


glycine decarboxylase complex -- H protein

AtGDH3

AT1G32470

0.593


glycine decarboxylase complex -- H protein

AtGDH1

AT2G35370

0.768


1.8.1.4

glycine decarboxylase complex -- L protein

AtmLPD1

AT3G17240

0.689


1.4.4.2

glycine decarboxylase complex -- P protein

AtGLDP1

AT4G33010

0.439

-1.126


1.4.4.2

glycine decarboxylase complex -- P protein

AtGLDP2

AT2G26080

-0.532


2.1.2.10

glycine decarboxylase complex -- T protein

AtGDT1

AT1G11860

-0.600


2.1.2.1

serine hydroxymethyltransferase

SHM1

AT4G37930

-0.513


2.6.1.45

serine:glyoxylate aminotransferase

AtSGT

AT2G13360

-0.566


1.1.1.29

peroxisomal hydroxypyruvate reductase

HPR1

AT1G68010

0.705

-0.689


2.7.1.31

glycerate kinase

GLYK

AT1G80380

-0.554


1.1.1.37

glyoxysomal malate dehydrogenase

MDHG1/

pMDH2

AT5G09660

-0.851


1.4.1.7

Fd-dependent glutamate synthase

Fd-GOGAT 1/GLU1

AT5G04140

-5.738


1.4.1.7

Fd-dependent glutamate synthase

Fd-GOGAT 2/GLU2

AT2G41220

1.070


chloroplast

dicarboxylate transporter

DiT2.2

AT5G64280

-0.439


mitochondrial dicarboxylate transporter

DIC1

AT2G22500

0.702


List of genes encoding enzymes involved in the photorespiratory pathway and whose expression is affected by knocking down Fd-GOGAT1 in the glu1-2 mutant. See also Figure 11. The presence of two gene IDs in some boxes indicates a nondiscriminating probe, i.e. the change in expression can not be attributed to a specific gene.

Kissen et al. BMC Genomics 2010 11:190   doi:10.1186/1471-2164-11-190

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