Table 2

Accessory genes islands

Island type

Genome

Details

Position

# of

CDSs

Length

Transposase

GC

%


Resistance related islands (R)

Alcoy

Contains several multi-drug related protein

68252 - 87883

22

19632

+

3534

Corby

69153 - 88336

22

19184

+

35.30

Philadelphia

68096 - 77398

9

9303

+

33.96

R1

Paris

Antibiotic persistance related system HipB/HipA; Phage related proteins Xre, and multi-drug efflux pump

66766 - 85124

21

18359

+

38.05

Lens

Methylase, prophage integrase, TraK homologous

68898 - 83207

10

14310

+

36.77

R2

Lens

Stability system StbDE

1755441 - 1767402

10

11962

+

40.83

Transport/secretion systems(TS)

Alcoy

Cobalt/zinc/cadmium efflux transporter helABC; ArsR regulatory proteins

1251900 - 1268281

16

16382

+

40.75

TS1

Corby

Cobalt/zinc/cadmium efflux transporter helABC

2781725 - 2832225

56

50500

+

39.40

DNA transfer (DT)

Alcoy

181578 - 230836

61

49259

-

38.56

DT1

tra and trb conjugal transfer proteins, Rac integrase roteins, htpX protease prophage regulatory protein alpA

Corby

181312 - 241161

63

59850

-

39.11

Alcoy

609680 - 648761

40

39082

-

39.52

DT2

Putative RNA helicase, two putative restrictases, tra and trb conjugal transfer proteins.

Corby

613277 - 656674

42

43398

-

39.25

Paris

Plasmid-like elements containing lvh, lvr

183831 - 234043

45

50213

-

39.90

DT3

Philadelphia

1353613 - 1400796

45

47184

+

37.47

Lens

172914 - 239494

64

66581

-

39.13

CRISPR systems (C)

Lens

3226572 - 3248046

16

21475

-

40.75

C1

Really similar CRISPR system

Alcoy

1169086 - 1179252

6

10167

-

38.49

C2

Paris

*Part of above P2 island

..

*45

....

....

....

Integrated phage related (PR)

Alcoy

MviN virulence factor

1292822 - 1329842

30

37021

+

36.14

PR1

Corby

1278158 - 1324830

49

46673

+

36.23

Philadelphia

1167775 - 1185079

15

17305

+

37.33

PR2

Philadelphia

Mainly transposases

173401 - 183804

10

10404

+

35.14

Corby

2493848 - 2532367

11

38520

+

38.11

PR3

Ankyrine containing domain

Alcoy

2486005 - 2509743

6

23739

+

37.00

PR4

Lens

Plasmid maintenance killer/antidote system

1190582 - 1219661

30

29080

+

34.79

PR5

Alcoy

Bacilysin system

2756698 - 2784130

33

27433

+

36.78

PR6

Philadelphia

Type IV secretion system

2296937 - 2366483

64

69547

+

38.04

PR7

Paris

Probable phage integration

2408503 - 2419758

16

11256

-

36.62

Not well defined (ND)

ND1

Paris

Cytochrome o

325750 - 334842

10

9093

-

38.77

ND2

Paris

Carbon storage regulator

1192799 - 1199183

10

6385

-

36.76

ND3

Paris

Nickel/Cobalt type II transport systems

1353408 - 1356362

6

2955

-

39.63

ND4

Philadelphia

No clear role

1439890 - 1450778

10

10889

+

35.17

ND5

Philadelphia

Mainly transposases and phages integrases

2892417 - 2904871

16

12455

+

34.97

ND6

Corby

No clear role

1182245 - 1189318

9

7074

-

36.78

ND7

Lens

Incomplete HipA/HipB system

2605322 - 2617191

12

11870

-

34.77

ND8

Paris

No clear role

1733202 - 1746135

7

12934

+

38.09

ND9

Paris

No clear role

2654264 - 2661604

9

7341

+

37.57

ND10

Paris

No clear role

2725059 - 2776774

61

51716

+

37

Alcoy

3003085 - 3015471

28

12387

+

37.15

ND11

Mainly transposases

Corby

3443118 - 3451379

14

8262

+

35.00

ND12

Lens

No clear role

2824095 - 2849378

16

25284

-

36.77

ND13

Corby

No clear role

2833804 - 2842585

10

8782

+

37.42


First column describes the name of the island and the genome of provenance. Following columns report a short description, the position on the genomes, the number of CDSs contained in the island, the length, the presence (+)/absence (-) of transposase genes and the GC content.

D'Auria et al. BMC Genomics 2010 11:181   doi:10.1186/1471-2164-11-181

Open Data