Table 3

Summary and taxonomic source of BLAST matches to 454 ESTs.

Taxonomic category

Contigs

Singletons

Combined Set


Conifer

1,170

(14.1%)

966

(9.0%)

1,536

(9.8%)

Other plant

4,984

(59.9%)

5,191

(48.4%)

8,309

(53.0%)

Insect

363

(4.4%)

1,176

(11.0%)

1,413

(9.0%)

Fungi

388

(4.7%)

1,392

(13.0%)

1,625

(10.4%)

Protozoa

104

(11.3%)

172

(1.6%)

240

(1.5%)

Other Eukaryote

1,208

(14.5%)

1,614

(15.0%)

2,260

(14.4%)

Bacteria

82

(1.0%)

199

(1.9%)

270

(1.7%)

Virus

16

(0.2%)

22

(0.2%)

30

(0.2%)


Number and percentages of unique best BLASTx matches of 454 EST contigs, singletons, and the combined sequence set to Uniref50 grouped by taxonomic category.

Parchman et al. BMC Genomics 2010 11:180   doi:10.1186/1471-2164-11-180

Open Data