Table 3

Characteristics of RPSA (pseudo)genes-repeats and transcription

Gene

Interspersed repeats in gene

Flanking repeats/family/class

Transcription


RPSAP1

/

/

/


RPSAP2

/

3': L2c/L2/LINE

Cerebrum, cerebellum, spleen, muscle, lymph node and duodenum


RPSAP3

/

5': ERV3-16A3_I-int/ERVL/LTR

3': CHR-2A/tRNA-Glu/SINE

Cerebrum


RPSAP4

ART2A/RTE-BovB/SINE

5': L1M3/L1/LINE

3': L1M3/L1/LINE and (CA)n/Simple_repeat and L1M3/L1/LINE

Cerebrum, cerebellum and spleen


RPSAP5

/

/

Cerebrum


RPSAP6

ART2A/RTE-BovB/SINE

3': CHRL/tRNA-Glu/SINEand tRNA-Glu-GAA/tRNA

/


RPSAP7

Bov-tA1/BovA/SINE

5': LTR16A2/ERVL/LTR

3': L1MEc/L1/LINE and L1M3/L1/LINE

/


RPSAP8

/

/

Cerebrum and cerebellum


RPSAP9

/

5': MIR/SINE and MIR/SINE and L1M2/L1/LINE

3': L1M2/L1/LINE and (CATA)n/Simple_repeat

/


RPSAP10

/

/

/


RPSAP11

/

5': Bov-tA2/BovA/SINE

3': L1M5/L1/LINE

Cerebrum, cerebellum, spleen, muscle, lymph node and duodenum


Van den Broeke et al. BMC Genomics 2010 11:179   doi:10.1186/1471-2164-11-179

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