Additional file 1.

Figure S1. Promoter analysis of genes binding NANOG, OCT4, and TP53 as determined by ChIP-Chip analyses. All results based on 105 re-samples for estimations of PE and PP a) analysis of promoters of NANOG binding genes using phylogenic foot printing of the -5000,+1000 portions of the promoters. b) Analysis of promoters of OCT4 binding genes using phylogenic foot printing of the -5000,+1000 portions of the promoters. All TBFS names having PE values equal to 5 except NANOG, OCT, OCT1, and OCT4 omitted from the graph for clarity. c) Analysis of promoters of TP53 binding genes using the -1500,+500 portions of the promoters. d) Analysis of promoters of TP53 binding genes using phylogenic foot printing of the -5000,+1000 portions of the promoters.

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Veerla et al. BMC Genomics 2010 11:145   doi:10.1186/1471-2164-11-145