Promoter analysis of genes binding E2F4 as determined by ChIP-Chip analysis. Estimations of PE and PP based on 106 re-samples and the -1500,+500 portions of the promoters. A) TFBS E-score plotted against P-score. Insert; list of binding sites with maximum -Log(PE) and -Log(PP), motifs in red; motifs with ≥ 80% presence, B) a three dimensional representation of the results with E-score on the x-axis, P-score on the y-axis, and %-presence on the z-axis. Insert, motifs with -Log (PE) and -Log(PP) equal to 6 and showing ≥ 80% presence.
Veerla et al. BMC Genomics 2010 11:145 doi:10.1186/1471-2164-11-145