Table 1

List of all sequence polymorphisms located on the Tortula ruralis chloroplast genome sequence.

position

location

state

strand

codon


7810

petD intron

Y (C/T)

-

7821

petD intron

M (A/C)

-

8076

petD intron

M (A/C)

-

9525

petB intron

Y (C/T)

-

19020

psbJ/petA IGR

K (G/T)

na

23480

psaI/ycf4 IGR

K (G/T)

na

23623

psaI/ycf4 IGR

K (G/T)

na

29394

trnM/trnV IGR

M (A/C)

na

41006

psaB/rps14 IGR

R (A/G)

na

45811

trnT/trnE IGR

W (A/T)

na

47128

ycf2

R (A/G)

-

GTA or GTG - synonymous

47698

ycf2

M (A/C)

-

TTA or TTC - nonsynonymous

49026

ycf2

K (G/T)

-

GTA or TTA - nonsynonymous

49946

ycf2

K (G/T)

-

AGT or ATT - nonsynonymous

50907

ycf2

R (A/G)

-

TAA or TAG - synonymous

53115

trnH/psbA IGR

R (A/G)

na

55502

matK

K (G/T)

-

TTG or TTT - nonsynonymous

56736

trnK intron

Y (C/T)

-

65765

atpI/atpH IGR

K (G/T)

na

67161

rps12

R (A/G)

-

CGA or CGG - synonymous

72206

rpoC1-exon2

K (G/T)

-

TGT or TTT - nonsynonymous

75462

rpoB

Y (C/T)

-

CGC or CGT - synonymous

81152

ndhB intron

R (A/G)

-

82247

ndhB exon1

Y (C/T)

-

CCA or TCA nonsynonymous

82463

rps7/ndhB IGR

W (A/T)

na

83334

rps12 exon2/rps7 IGR

W (A/T)

na

84909

Noncoding IR

K (G/T)

na

105822

ndhG

M (A/C)

+

GTA or GTC - synonymous

121800

Noncoding IR

M (A/C)

na


Oliver et al. BMC Genomics 2010 11:143   doi:10.1186/1471-2164-11-143

Open Data