Table 1

Statistical summary of the genomic sequences of four Oryza species used in this study.

Oj

On

Or

Og


Genome size (Mbp)

382

448

439

354

No. of BESs

-

106,124

70,982

66,821

Total length (bp)

382,150,945

69,913,922

49,984,295

37,764,022

Total length of repetitive sequences (bp)

148,769,283

27,735,588

19,535,869

11,691,571

Fraction of repetitive sequences (%)

38.9

39.7

39.1

31.0

No. of BESs used for mapping

-

76,114

51,863

54,008

No. of mapped BESs

-

67,813

46,959

46,836

No. of ambiguous BESs

-

4,309

2,848

3,563

No. of unmapped BESs

-

3,992

2,056

3,609

Fraction of unmapped BESs (%)

-

5.2

4.0

6.7


Oj, O. sativa L. ssp. japonica; On, O. nivara; Or, O. rufipogon; and Og, O. glaberrima.

Sakai and Itoh BMC Genomics 2010 11:121   doi:10.1186/1471-2164-11-121

Open Data