Additional file 19.

Indirect functional classifications of the genes of Oj. We obtained protein-coding nucleotide sequences of representative sequences for each gene of Oj from RAP-DB and conducted BLASTX searches against the nr database with a threshold of 10-10. Indirect classifications were facilitated using four sets of the nr database proteins: Top-hit, top-hit genes; ID = 90%, nr database proteins with amino acid identities over 90%; ID = 80%, nr database proteins with amino acid identities over 80%; ID = 70%, nr database proteins with amino acid identities over 70%. As a comparison, the functional classification of the representative sequences of the Oj genes (Rep) is shown on the right.

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Sakai and Itoh BMC Genomics 2010 11:121   doi:10.1186/1471-2164-11-121