Table 2

MIPS FunCat analysis of O. affinis ESTs compared with Arabidopsis

MIPS Functional category

No. ESTs

%


Metabolism

01 metabolism

196

22.3%

02 energy

53

6.0%

Information pathways

10 cell cycle and DNA processing

7

0.8%

11 transcription

9

1.0%

12 protein synthesis

60

6.8%

14 protein fate (folding, modification, destination)

88

10.0%

16 protein with binding function or cofactor requirement (structural or catalytic)

7

0.8%

Transport

20 cellular transport, transport facilities and transport routes

99

11.3%

Perception and response to stimuli

30 cellular communication/signal transduction mechanism

11

1.3%

32 cell rescue, defense and virulence

74

8.4%

34 interaction with the environment

25

2.8%

36 systemic interaction with the environment

1

0.1%

Developmental processes

40 cell fate

13

1.5%

41 development (systemic)

16

1.8%

42 biogenesis of cellular components

9

1.0%

43 cell type differentiation

6

0.7%

45 tissue differentiation

1

0.1%

47 organ differentiation

1

0.1%

Localisation

70 subcellular localisation

3

0.3%

Proteins with unknown functions

94

10.7%

No match*

107

12.2%


*The cyclotide precursors are within this subcategory.

Qin et al. BMC Genomics 2010 11:111   doi:10.1186/1471-2164-11-111

Open Data