Table 2

Classification of 2,315 uniESTs according to origin of the sequences

Fungal genes

Rice genes

Unidentified


UniESTs (%*)

712 (30.9)

1,562 (67.9)

28 (1.2)

Singletons

468

1,205

24

Contigs (No. ESTs)

244 (1,193)

357 (1,327)

4 (48)


Infection library specific

327 (373)

1,038 (1,210)

Both library

75 (587)

87 (568)

Subtraction library specific

310 (701)

437 (754)


The origin of sequences were determined by the searches of rice (Indica type) and M. oryzae (strain 70-15) draft genome sequence, dbEST with BLASTN algorithm at expect value of <e-30 and NCBI non-redundant protein db with BLASTX algorithm (<e-5).

* Proportion was calculated based on 2,302 uniESTs.

Kim et al. BMC Genomics 2010 11:104   doi:10.1186/1471-2164-11-104

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