Table 3

Different amino acid indices and secondary structural traits of 519 orthologous proteins present in 12 Prochlorococcus strains

Organism

Amino acid indices (Mean)

Secondary structural traits (%)



Hydrophobicity

Aromaticity

Isoelectric Point (pI)

Instability Index (II)

Alpha helix

Beta sheet

Coil




LL1

-0.11

0.067

6.62

40.61

37.51

13.76

48.73

LL2

-0.11

0.067

6.65

40.71

37.45

13.74

48.81

LL3

-0.16

0.072

7.07

38.88

35.85

14.58

49.57

LL4

-0.16

0.072

7.08

38.81

36.13

14.26

49.61

LL5

-0.18

0.073

7.08

38.09

35.15

14.68

50.17

LL6

-0.18

0.073

7.07

38.10

35.15

14.69

50.16

HL1

-0.20

0.077

7.15

37.03

34.32

15.33

50.35

HL2

-0.20

0.077

7.18

37.19

34.31

15.36

50.33

HL3

-0.20

0.077

7.23

37.33

34.42

15.36

50.22

HL4

-0.20

0.077

7.32

37.36

34.54

15.27

50.19

HL5

-0.20

0.077

7.21

37.02

34.38

15.27

50.35

HL6

-0.20

0.077

7.14

37.15

34.35

15.20

50.45


Paul et al. BMC Genomics 2010 11:103   doi:10.1186/1471-2164-11-103

Open Data