Table 2

General features and correlations of GC3 and GT3 content with first two axes of COA on RSCU values of genes in 12 Prochlorococcus genomes

Organism

ORFs under study

G+C- content (%)

% of total variation explained by COA on RSCU

Correlation coefficient (r)


Axis 1 vs.

Axis 2 vs.


Axis 1

Axis 2

GC3

GT3

GC3

GT3


P. marinus str. MIT 9313

(LL1)

1947

52.1

14.33

10.89

-0.59

0.85

-0.69

-0.45

P. marinus str. MIT 9303

(LL2)

2080

51.6

15.93

12.29

-0.89

0.43

-0.26

-0.86

P. marinus subsp. marinus str. CCMP1375

(LL3)

1492

37.1

7.47

6.23

-0.15

-0.81

-0.58

0.25

P. marinus str. MIT 9211

(LL4)

1486

38.6

7.31

6.10

-0.24

-0.78

0.52

-0.36

P. marinus str. NATL1A

(LL5)

1541

35.8

6.73

5.67

-0.50

-0.24

-0.20

0.71

P. marinus str. NATL2A

(LL6)

1517

35.9

6.81

5.80

0.54

0.07

-0.10

0.71

P. marinus str. AS9601

(HL1)

1463

31.9

5.51

5.07

-0.07

0.06

0.11

-0.13

P. marinus str. MIT 9312

(HL2)

1503

31.8

5.85

5.20

0.23

-0.09

-0.09

0.10

P. marinus subsp. pastoris str. CCMP1986

(HL3)

1451

31.5

5.96

5.68

-0.05

-0.06

0.17

0.03

P. marinus str. MIT 9515

(HL4)

1465

31.6

5.78

5.49

0.11

-0.12

-0.26

0.00

P. marinus str. MIT 9215

(HL5)

1506

31.8

5.67

5.25

-0.21

-0.07

0.09

-0.14

P. marinus str. MIT 9301

(HL6)

1469

32.0

5.54

5.12

0.09

0.00

-0.13

-0.11


Correlations significant at p < 10-6 are indicated in boldface.

Paul et al. BMC Genomics 2010 11:103   doi:10.1186/1471-2164-11-103

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