Table 1 |
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|
Differential expression of P. multocida genes involved in SOS response |
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|
GeneID |
Product Name |
Locus |
AMX* |
CTC* |
ENR* |
|
|
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|
1244239 |
ImpA |
impA |
-0.52 |
-0.53 |
4.55 |
|
1244433 |
DNA-binding protein Fis |
fis |
ns |
ns |
1.41 |
|
1244528 |
LexA repressor |
lexA |
ns |
1.60 |
9.87 |
|
1244611 |
Hypothetical protein PM1264 |
- |
-0.78 |
-0.57 |
ns |
|
1244637 |
Transcriptional repressor protein MetJ |
metJ |
-0.53 |
-0.74 |
-0.80 |
|
1244659 |
Hypothetical protein PM1312 |
- |
-0.56 |
-0.68 |
-0.31 |
|
1244737 |
DNA-directed RNA polymerase subunit alpha |
rpoA |
ns |
-0.77 |
1.27 |
|
1244795 |
Hypothetical protein PM1448 |
- |
-0.81 |
-0.70 |
1.29 |
|
1244828 |
Hypothetical protein PM1481 |
- |
-0.53 |
-0.51 |
-0.51 |
|
1244993 |
Hypothetical protein PM1646 |
- |
-0.62 |
ns |
-0.70 |
|
1245061 |
Hypothetical protein PM1714 |
- |
-0.74 |
-0.91 |
ns |
|
1245083 |
DNA-directed RNA polymerase subunit beta' |
rpoC |
ns |
-0.76 |
-0.87 |
|
1245184 |
ATP-dependent helicase HepA |
hepA |
-0.77 |
-0.77 |
1.69 |
|
1245314 |
DNA-binding transcriptional activator GutM |
gutM |
-0.55 |
-0.69 |
-0.62 |
|
1243539 |
Hypothetical protein PM0192 |
recJ |
-0.77 |
-0.79 |
1.24 |
|
1243679 |
Hypothetical protein PM0332 |
recN |
ns |
ns |
11.54 |
|
1243758 |
DNA-dependent helicase II |
uvrD |
ns |
ns |
4.26 |
|
1243814 |
DNA polymerase IV |
dinP |
-0.76 |
-0.83 |
1.83 |
|
1244020 |
Hypothetical protein PM0673 |
- |
-0.63 |
-0.81 |
-0.47 |
|
1244323 |
Holliday junction DNA helicase B |
ruvB |
ns |
-0.78 |
2.37 |
|
1244324 |
Holliday junction DNA helicase motor protein |
ruvA |
ns |
ns |
3.39 |
|
1244459 |
DeaD |
deaD |
-0.78 |
-0.72 |
-0.67 |
|
1244499 |
DNA repair protein RadC |
radC |
-0.52 |
-0.60 |
-0.65 |
|
1244507 |
DNA polymerase III subunit beta |
dnaN |
ns |
ns |
1.41 |
|
1244526 |
Primosomal replication protein N |
priB |
ns |
ns |
1.67 |
|
1244563 |
DNA polymerase III subunit delta |
holA |
ns |
-0.88 |
1.38 |
|
1244666 |
MutY |
mutY |
-0.68 |
-0.86 |
1.17 |
|
1244774 |
RecQ |
recQ |
-0.86 |
-0.84 |
1.11 |
|
1244823 |
DNA gyrase subunit B |
gyrB |
ns |
1.36 |
1.45 |
|
1245063 |
NAD-dependent DNA ligase LigA |
ligA |
-0.84 |
1.08 |
1.56 |
|
1245164 |
Recombinase A |
recA |
ns |
ns |
9.96 |
|
1245177 |
DNA mismatch repair protein |
mutS |
-0.87 |
-0.78 |
1.50 |
|
1245268 |
ATP-dependent RNA helicase RhlB |
rhlB |
-0.73 |
-0.83 |
1.07 |
|
1245298 |
Excinuclease ABC subunit A |
uvrA |
-0.78 |
ns |
2.57 |
|
1243785 |
Hypothetical protein PM0438 |
ftsH |
-0.94 |
-0.80 |
1.13 |
|
1244083 |
Hypothetical protein PM0736 |
DnaK |
ns |
-0.74 |
1.50 |
|
1244087 |
Hypothetical protein PM0740 |
dnaJ |
-0.74 |
-0.79 |
1.29 |
|
1245051 |
ClpB |
clpB |
-0.66 |
ns |
2.14 |
|
1245095 |
ATP-dependent protease ATP-binding subunit |
hslU |
-0.70 |
ns |
2.58 |
|
1245163 |
Recombination regulator RecX |
recX |
-0.54 |
-0.78 |
6.44 |
|
|
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|
* Ratio of treatment/control normalized intensities. ns: no significant change in gene expression with sub-MIC of antibiotic. |
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|
Nanduri et al. BMC Genomics 2009 10(Suppl 2):S4 doi:10.1186/1471-2164-10-S2-S4 |
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