Table 2 |
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|
A selection of chicken immune genes present on the whole genome chicken microarray |
|||||||
|
Net Intensity |
|||||||
|
|
|||||||
|
Gene Name |
oligo name |
chicken |
duck |
magpie goose |
starling |
kookaburra |
tawny frogmouth |
|
|
|||||||
|
Interleukins |
|||||||
|
IL-1β |
RIGG20417 |
++ |
+++ |
++ |
+ |
++ |
+ |
|
IL-2 |
RIGG20032 |
+ |
++ |
+++ |
+ |
+ |
++ |
|
IL-6 |
RIGG20074 |
++ |
++ |
++ |
++ |
+ |
+++ |
|
IL-8 |
RIGG20034 |
x |
++ |
x |
++ |
x |
x |
|
IL-12α |
RIGG20057 |
+++ |
+ |
++ |
+ |
++ |
++ |
|
IL-13 |
RIGG20059 |
+++ |
++ |
++ |
+ |
+++ |
++ |
|
Interferons |
|||||||
|
IFNβ |
RIGG20053 |
+++ |
+++ |
+++ |
+++ |
+++ |
+++ |
|
IFNγ |
RIGG20054 |
+ |
++ |
x |
+ |
+ |
x |
|
IFNλ |
RIGG20055 |
++ |
+ |
+ |
+ |
+ |
+ |
|
Chemokines |
|||||||
|
K203 |
RIGG00459 |
+++ |
+ |
+++ |
+++ |
+++ |
+++ |
|
CX3C |
RIGG00463 |
++ |
+++ |
++ |
++ |
+++ |
++ |
|
K60 (CXC chemokine) |
RIGG00467 |
++ |
+++ |
+++ |
++ |
+ |
+ |
|
CXCL14 |
RIGG00466 |
+++ |
+++ |
+ |
++ |
+++ |
++ |
|
Toll like receptors |
|||||||
|
TLR2 |
RIGG14974 |
++ |
++ |
++ |
++ |
+++ |
++ |
|
TLR15 |
RIGG14349 |
+++ |
+++ |
++ |
+++ |
+++ |
+++ |
|
TLR21 |
RIGG10152 |
++ |
+ |
+++ |
++ |
+ |
++ |
|
Defensins |
|||||||
|
gallinacin 1 |
RIGG20043 |
+++ |
+++ |
++ |
+++ |
+++ |
+++ |
|
gallinacin 3 |
RIGG20044 |
+ |
+ |
+++ |
+ |
++ |
++ |
|
MHC |
|||||||
|
MHC class I |
RIGG12432 |
+++ |
+++ |
+++ |
+++ |
+++ |
+++ |
|
MHC class II |
RIGG16832 |
++ |
+ |
++ |
+ |
+ |
++ |
|
Caspases |
|||||||
|
caspase 1 |
RIGG02179 |
++ |
+++ |
+++ |
++ |
++ |
+ |
|
caspase 3 |
RIGG15820 |
x |
++ |
+ |
+ |
x |
x |
|
|
|||||||
|
Positive intensity signals are represented by '+' according to the following scale (+ = <50, ++ = 51–100 and +++ = >150. Crosses 'x' represent signals that were deemed unreliable as they did not pass quality control. All results are based on averages of at least two independent hybridisations containing dual representation of each gene. |
|||||||
|
Crowley et al. BMC Genomics 2009 10(Suppl 2):S3 doi:10.1186/1471-2164-10-S2-S3 |
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