Additional file 4.

Access database. All RNA-Seq data are provided in an Access database file. This database contains information on the annotated CDS and ncRNAs with their 10403S locus name, 10403S start and end coordinates, lengths, strand, EGD-e locus, EGD-e gene name, EGD-e common name, EGD-e role category, codon bias, GEI, average GEI in 10403S and ΔsigB strains, fold change for the four possible comparisons involving the two replicates with 10403S and the ΔsigB strains, q-values of the binomial tests, operon annotation, promoter annotation, list of σB-dependent genes identified in this study, and data from the other 3 studies of the σB regulon in L. monocytogenes using microarrays including Ollinger et al. [12], Hain et al. [11], and Raengpradub et al. [10].

Format: MDB Size: 3.6MB Download file

Oliver et al. BMC Genomics 2009 10:641   doi:10.1186/1471-2164-10-641