Table 3

Contigs and single reads of Rhagoletis pomonella odorant binding proteins (OBPs) and other candidate transcripts for odor reception†.

Match

ID

Aa

%I

bp

Read/Contig


OBP 19a

11748

105

63.8

602 (15)

C10486 [EZ126705]

OBP 19b

2297

120

41.6

578 (29)

C21814 [EZ138033]

OBP 44a

2297

125

65.

934 (159)

C21478 [EZ137697]

OBP 49a

30052

40

50.0

213 (4)

C02098 [EZ118317

OBP 50e

13939

43

41.8

233 (3)

C15401 [EZ131620]

51

49.0

264

E7OMS0H01BS27Q

OBP 56a

11797

94

27.6

436 (70)

C23516 [EZ139735]

OBP 56d

11218

123

38.2

532 (35)

C00020 [EZ116239]

OBP 56 h

13874

112

37.5

642 (73)

C22766 [EZ138985]

OBP 59a

13517

47

63.8

215

E7OMS0H02EEDPG

OBP 83cd

15582

126

47.6

886 (20)

C20125 [EZ136344]

OBP 83ef

31557

217

49.7

1395 (71)

C20870 [EZ137089]

OBP 83 g

31558

59

57.6

474 (44)

C20023 [EZ136242]

OBP 99b

7592

123

53.6

536 (244)

C19484 [EZ135703]

OBP 99c

7584

139

57.5

759 (76)

C22673 [EZ138892]

OBP 99d

15505

51

45.1

613 (10)

C02834 [EZ119053]

Pbprp 1*

10436

42

50.0

286 (21)

C23956 [EZ140175]

30

46.0

190 (11)

C22750 [EZ138969]

Pbprp 2

1668

150

25.0

800 (52)

C23271 [EZ139490]

Similar to Pbprp 2*

1668

106

38.6

520 (73)

C14712 [EZ130931]

Pbprp 3*

11421

18

72.0

241 (2)

C02940 [EZ119159]

144

68.0

410 (4)

C08103 [EZ124322]

Pbprp 4*

1176

124

54.8

737 (60)

C22809 [EZ139028]

Pbprp 5*

6641

128

34.3

820 (136)

C22963 [EZ139182]

Similar to Pbprp 5*

6641

63

44.4

351 (6)

C16946 [EZ133165]

Sensory neuron membrane protein 1

7000

81

75.0

257

E7OMS0H01CAV8S

92

73.0

276 (5)

C07451 [EZ123670]

G protein salpha 60A

2835

274

93.0

1538 (30)

C08446 [124665]

Arrestin 2

5962

168

97.0

807 (91)

C15900 [EZ132119]

56

89.0

265

E7OMS0H02EWNVX

Arrestin 1

5711

260

92.0

1306 (79)

C00173 [EZ116392]

Pherokine 3

9358

113

66.0

442 (21)

C02839 [EZ119058]

Putative chemosensory protein CSP1

30172

93

75.0

485 (25)

C23468 [EZ139687]

Cytochrome P450 reductase

11567

140

83.0

1253 (80)

C22056 [EZ138275]


†Contigs and reads matching the same D. melanogaster locus map to different regions of the Drosophila gene. Match is the D. melanogaster locus name for the closest match, CG is the Celera Genome number of the match, aa is the number of amino acids in the single read or contig, %I is the percent aa match between the R. pomonella and D. melanogaster homologous proteins, bp is the base pair length of the single read or contig (number of sequences contributing to contig), Read/Contig is the R. pomonella ID in our data base and the GenBank TSA Accession number.

*Homologous sequence also found in the congener R. suavis.

Schwarz et al. BMC Genomics 2009 10:633   doi:10.1186/1471-2164-10-633

Open Data