Table 3 |
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|
Novel predicted miRNA loci. |
||||
|
Sequence |
Location |
Count |
Hairpin length |
Predicted Targets |
|
|
||||
|
TCTTTCCGAGTCCTCCCATACC |
scaffold_155:237816..237837 |
147 |
171 |
Yes |
|
TCGTAATGCTTCATTCTCACAA1a |
scaffold_148:201299..201320 |
49 |
90 |
Yes |
|
TCGAATTTGGGCTTGAGATTGa |
LG_III:7559439..7559459 |
107 |
101 |
Yes |
|
TTGTAAGGGAAGCCCACATGG3a |
LG_I:1810419..1810439 |
971 |
119 |
Yes |
|
TCTTGCTCAAATGAGTATTCCA1 |
LG_XV:698203..698224 (miR828) |
55 |
148 |
Yes |
|
TTCATTCCTCTTCCTAAAATGG1, 3 |
LG_XII:8278996..8279017 |
647 |
142 |
Yes |
|
TCTTGCTCAAATGAGTATTCCA |
LG_XII:2137739..2137760 (miR828) |
55 |
146 |
Yes |
|
CATCTGCAGACTACTTGCCTTa |
LG_XIV:3657623..3657643 |
5 |
108 |
Yes |
|
TTCATTCCTCTTCCTAAAATGG3 |
scaffold_129:380652..380673 |
647 |
128 |
Yes |
|
TCATGAATTCAACCTGATTGGa |
LG_II:14180794..14180814 |
106 |
255 |
No |
|
AGCTCCGAGCTCTAATTATGTGGG2 |
LG_II:22547443..22547466 |
20 |
174 |
No |
|
TTCCTACAGTTATGATGGCCC3a |
LG_VI:6175922..6175942 |
18 |
115 |
No |
|
TCTGTCGCTGGAAAGATGGTACa |
LG_XVII:3400803..3400824 |
77 |
147 |
No |
|
GGCATGAGGTGTTTGGCAAGA1a |
LG_II:21846112..21846132 |
13 |
126 |
No |
|
ATATGATGGGTCTCATTTAGTAGA |
LG_XIV:2363320..2363343 |
32 |
240 |
No |
|
|
||||
|
Novel predicted miRNA loci with an identified miRNA* sequence and a minimum miRNA read count of 5, as identified using the UEA Plant sRNA toolkit miRCat tool. 1Overlaps an aligned EST. 2Overlaps a repeat. 3Predicted in [56]. aShows no homology to existing plant miRNAs. |
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|
Klevebring et al. BMC Genomics 2009 10:620 doi:10.1186/1471-2164-10-620 |
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