Additional file 11.

Chromosome distribution plot of scaffold_117. short RNA, gene and repeat density plots of scaffold_117. Coloured bars, above the axis for plus strand and below the axis for minus strand, show expression counts in 0.1 Mb windows for 18 (grey), 19 (yellow), 20 (purple), 21 (cyan), 22 (dark blue), 23 (green) and 24 (red) nucleotide sequences. Below each plot the frequency distribution in 0.1 Mb windows for gene (top) and repeat density (bottom) is shown. Repeat density was calculated using RepeatMasker data from the PopGenIE web resource [29].

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Klevebring et al. BMC Genomics 2009 10:620   doi:10.1186/1471-2164-10-620