Table 2

Completion Rates comparing the Fluidigm platform with standard TaqMan chemistry (CGF)

Assay

Fluidigm Completion Rate

95% CI lower

95% CI upper

N

CGF Completion Rate

95% CI lower

95% CI upper

M

Completion rate based on


A-050522

97.89

97.00

98.78

995

96.95

95.88

98.02

995

All Samples (N = M = 995)

A-050546

98.89

98.24

99.54

995

98.85

98.19

99.51

995

All Samples (N = M = 995)

A-051020

98.89

98.24

99.54

995

97.66

96.72

98.60

995

All Samples (N = M = 995)

A-048530

98.69

97.99

99.40

995

98.96

98.33

99.59

995

All Samples (N = M = 995)

A-051016

99.40

98.92

99.88

995

98.78

98.10

99.46

995

All Samples (N = M = 995)

A-028526

99.70

99.36

100.00

995

98.66

97.91

99.41

905

N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)

A-041985

98.29

97.49

99.10

995

98.22

97.36

99.08

905

N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)

A-051013

99.50

99.06

99.94

995

98.59

97.86

99.32

995

All Samples (N = M = 995)

A-051017

99.40

98.92

99.88

995

99.41

98.93

99.89

995

All Samples (N = M = 995)

A-051018

99.50

99.06

99.94

995

99.32

98.81

99.83

995

All Samples (N = M = 995)

A-029470

99.80

99.52

100.00

995

98.66

97.91

99.41

905

N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)

A-050521

99.70

99.36

100.00

995

97.55

96.59

98.51

995

All Samples (N = M = 995)

A-048529

99.80

99.52

100.00

995

99.25

98.71

99.79

995

All Samples (N = M = 995)

A-041990

99.90

99.70

100.00

995

99

98.35

99.65

905

N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)

001_2058

99.50

99.06

99.94

995

99

98.35

99.65

905

N = 995 Fluidigm M = 905 CGF (90 HapMap excluded)

A-050301

99.50

99.06

99.94

995

99.28

98.75

99.81

995

All Samples (N = M = 995)

A-051015

99.80

99.52

100.00

995

99.22

98.67

99.77

995

All Samples (N = M = 995)

A-051019

99.50

99.06

99.94

995

98.82

98.15

99.49

995

All Samples (N = M = 995)

A-042514

99.30

98.78

99.82

995

99.65

99.28

100.00

995

All Samples (N = M = 995)

A-051014

99.90

99.70

100.00

995

99.61

99.22

100.00

995

All Samples (N = M = 995)

A-035643

99.60

98.29

100.00

90

N.D.

N.D

N.D.

N.D.

N = 90 Fluidigm HapMap

A-036266

99.70

98.57

100.00

90

N.D.

N.D.

N.D.

N.D.

N = 90 Fluidigm HapMap

A-048531

100.00

100.00

100.00

90

94.59

89.92

99.26

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050302

100.00

100.00

100.00

90

87.39

80.53

94.25

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050526

99.90

99.24

100.00

90

89.19

82.77

95.61

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050527

100.00

100.00

100.00

90

89.19

82.77

95.61

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050528

100.00

100.00

100.00

90

90.09

83.92

96.26

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050532

100.00

100.00

100.00

90

89.19

82.77

95.61

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050534

100.00

100.00

100.00

90

89.19

82.77

95.61

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050537

100.00

100.00

100.00

90

90.09

83.92

96.26

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050540

100.00

100.00

100.00

90

90.09

83.92

96.26

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-050541

100.00

100.00

100.00

90

89.19

82.77

95.61

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051351

100.00

100.00

100.00

90

99.1

97.15

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051352

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051353

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051354

99.80

98.87

100.00

90

N.D.

N.D.

N.D.

N.D.

N = 90 Fluidigm HapMap

A-051355

100.00

100.00

100.00

90

99.1

97.15

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051356

100.00

100.00

100.00

90

99.1

97.15

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051357

100.00

100.00

100.00

90

99.1

97.15

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051358

100.00

100.00

100.00

90

N.D.

N.D.

N.D.

N.D.

N = 90 Fluidigm HapMap

A-051359

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051360

99.90

99.24

100.00

90

97.3

93.95

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051361

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051362

99.90

99.24

100.00

90

99.1

97.15

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051363

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051364

100.00

100.00

100.00

90

98.2

95.45

100.00

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap

A-051365

100.00

100.00

100.00

90

94.59

89.92

99.26

90

N = 90 Fluidigm HapMap and M = 90 CGF HapMap


Wang et al. BMC Genomics 2009 10:561   doi:10.1186/1471-2164-10-561

Open Data