Table 2

Number of genotyped and validated markers from the three data analysis approaches.

Approach

Tested

Validated


#markers

%

#markers

%


N1

47

12.2

17

36


N2

46

12.0

22

48


N1N2

47

12.2

15

32


V1

100

26.1

53

53


V1N1

47

12.2

30

64


V1N2

47

12.2

18

38


V1N1N2

50

13.1

28

56


Total

384

100

183

48


N1, N2 and V1 represent SNPs predicted by only one of those three analyses; N1N2, V1N1, V1N2, and V1N1N2 indicate SNPs predicted by multiple analyses. Tested percentage refers to the number of markers in each group compared to all; the rate of validation within each approach is given as the validated percentage.

S├ínchez et al. BMC Genomics 2009 10:559   doi:10.1186/1471-2164-10-559

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