Research article
Genome reannotation of Escherichia coli CFT073 with new insights into virulence
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* Corresponding author: Huaiqiu Zhu hqzhu@pku.edu.cn
- † Equal contributors
1 State Key Laboratory for Turbulence and Complex Systems, and Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China
2 Center for Theoretical Biology, Peking University, Beijing 100871, China
3 Center for Protein Science, Peking University, Beijing 100871, China
BMC Genomics 2009, 10:552 doi:10.1186/1471-2164-10-552
Published: 22 November 2009Additional files
Additional file 1:
The ruled-out RefSeq genes in the reannotation. This additional file is a list of the 608 ruled-out RefSeq genes, information includes gene location, strand, gene length, PID, gene synonym code and COG product.
Format: PTT Size: 48KB Download file
Additional file 2:
The newly added CDSs in the reannotation. This additional file contains the 299 newly added CDSs in the reannotation, information includes gene location, strand, gene length, PID, Gene synonym code and gene product.
Format: PTT Size: 21KB Download file
Additional file 3:
The ptt file for all protein-coding genes. This additional file encloses all the protein-coding genes in the reannotation, information includes gene ID, position, strand, other database accession number, and function comments.
Format: PTT Size: 483KB Download file
Additional file 4:
The newly added genes in GI regions. This additional file contains the 102 newly added genes which are located in GI(Genomic Island) regions, information includes PAI ID, position, strand, length, and comments.
Format: PTT Size: 9KB Download file
Additional file 5:
The newly added virulence factor genes. This additional file contains the 19 newly added genes which contribute to the virulence in pathogen strain CFT073, information includes gene location, strand, gene length, and function comments.
Format: PTT Size: 1KB Download file
Additional file 6:
The miscellaneous RNA genes in the reannotation. This additional file contains the 46 newly added miscellaneous RNA genes in the reannotation, information includes gene location, strand, gene name, and code in the reannotation.
Format: PTT Size: 2KB Download file