GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes
1 Department of Biological Sciences, Simon Fraser University, Burnaby, Canada
2 Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, Canada
BMC Genomics 2009, 10:529 doi:10.1186/1471-2164-10-529Published: 16 November 2009
The majority of the genes even in well-studied multi-cellular model organisms have not been functionally characterized yet. Mining the numerous genome wide data sets related to protein function to retrieve potential candidate genes for a particular biological process remains a challenge.
GExplore has been developed to provide a user-friendly database interface for data mining at the gene expression/protein function level to help in hypothesis development and experiment design. It supports combinatorial searches for proteins with certain domains, tissue- or developmental stage-specific expression patterns, and mutant phenotypes. GExplore operates on a stand-alone database and has fast response times, which is essential for exploratory searches. The interface is not only user-friendly, but also modular so that it accommodates additional data sets in the future.
GExplore is an online database for quick mining of data related to gene and protein function, providing a multi-gene display of data sets related to the domain composition of proteins as well as expression and phenotype data. GExplore is publicly available at: http://genome.sfu.ca/gexplore/ webcite