Table 3

Differentially expressed miRNAs between infected and non-infected lungs (P < 0.05, Q < 0.05 and Ratio > 2)

miRNA

Position on chromosomes

Reads in infected

Reads in non-infected

Ratio infected/non

-infected (Normalized)


gga-mir-1576

chr13:18532632-18532726

8

0

-1

gga-mir-1636

chr 15: 4729959-4730046

6

0

-

gga-mir-206

chr3: 110390439-110390514

101

9

20.38

gga-mir-1793

chr9: 25115521-25115617

25

5

8.36

gga-mir-1599

chr7: 25926968-25927029

48

13

6.71

gga-mir-1701

chr4: 82234261-82234337

27

9

5.45

gga-mir-449

chrZ: 16040613-16040698

38

14

4.93

gga-miR-140

chr11: 21030641-21030735

1438

803

3.25

gga-mir-1416

chrZ: 34596479-34596567

17

10

3.09

gga-mir-1458

chr9: 11743528-11743637

25

15

3.03

gga-mir-1612

chr9: 6031748-6031831

39

31

2.29

gga-mir-1a-1

chr20: 8107831- 8107901

551

471

2.12

gga-mir-1a-2

chr2: 105673483- 105673567

593

523

2.06

gga-mir-103-2

chr4: 91906889-91906971

49

148

0.49

gga-mir-99a

chr1: 102424333-102424413

23

92

0.45

gga-mir-456

chr3: 32679710-32679821

30

122

0.45

gga-let-7c

chr1: 102425086-102425169

735

3059

0.44

gga-mir-181b-2

chr17: 10220137- 10220221

20

89

0.41

gga-let-7j

chr26: 1442697-1442779

648

2938

0.40

gga-mir-15b

chr9: 23742966- 23743056

9

41

0.40

gga-let-7a-1

chr12: 6302911-6303000

658

3020

0.40

gga-let-7a-2

chr24: 3380993-3381064

671

3113

0.39

gga-let-7g

chr12: 2809078-2809160

342

1623

0.38

gga-mir-181a-2

chr17: 10218497-10218587

57

283

0.37

gga-mir-200b

chr21: 2585642-2585726

14

72

0.35

gga-let-7a-3

chr1: 73421272-73421347

892

4699

0.34

gga-mir-100

chr21: 3372894-3372973

15

79

0.34

gga-mir-30d

chr2: 148337263-148337326

60

334

0.33

gga-mir-30e

chr23: 5248414-5248509

20

112

0.32

gga-mir-181a-1

chr8: 2001561-2001664

65

366

0.32

gga-mir-181b-1

chr8: 2001750-2001838

18

106

0.31

gga-let-7k

chr26: 1442897-1442979

53

327

0.29

gga-mir-125b

chr1: 102457647-102457736

19

119

0.29

gga-mir-1b

chr23: 4663912-4663975

10

63

0.29

gga-mir-146b

chr6: 24570060-24570164

102

691

0.27

gga-mir-10a

chrun_random: 379304-379377

86

598

0.26

gga-mir-101-2

chr8: 29051918-29051993

18

136

0.24

gga-mir-27b

chrZ: 41157642-41157738

5

41

0.22

gga-mir-144

chr19: 5824123-5824207

11

94

0.21

gga-let-7f

chr12: 6302497-6302583

947

8228

0.21

gga-mir-33-1

chr1: 51372282-51372350

2

19

0.19

gga-mir-126

chr17: 8431742-8431825

25

250

0.18

gga-mir-1456

chrZ: 44167486-44167595

2

20

0.18

gga-mir-22

chr19: 5352096- 5352195

4

43

0.17

gga-mir-16c

chr4: 4048689- 4048759

6

65

0.17

gga-mir-30a-3p

chr3: 85102239- 85102310

58

656

0.16

gga-mir-101

chrZ: 28037874- 28037952

19

219

0.16

gga-mir-30a-5p

chr3: 85102239- 85102310

68

785

0.16

gga-mir-30c-1

chr23: 5249637-5249725

3

37

0.15

gga-mir-146c

chr4: 92169271- 92169399

18

243

0.13

gga-mir-26a

chr2: 4467516- 4467592

98

1326

0.13

gga-mir-451

chr19: 5823968-5824036

93

1287

0.13

gga-mir-146a

chr13: 7555593- 7555691

7

105

0.12

gga-mir-21

chr19: 7322072-7322168

46

771

0.11

gga-mir-24

chrZ: 41158175-41158242

18

344

0.10

gga-mir-17-3p

chr1: 152248781-152248865

2

44

0.08

gga-mir-20a

chr1: 152248306-152248403

1

23

0.08

gga-mir-23b

chrZ: 41157406-41157491

12

285

0.08

gga-mir-142-3p

chr19: 496983-497070

2

49

0.07

gga-mir-142-5p

chr19: 496983-497070

2

49

0.07

gga-mir-17-5p

chr1: 152248781-152248865

2

55

0.07

gga-mir-19b

chr1: 152248183-152248269

1

31

0.06

gga-mir-30c-2

chr3: 85126853-85126924

1

34

0.05

gga-mir-739

7

241

0.05

gga-mir-15c

chr4: 4049055-4049130

1

46

0.04

gga-mir-15a

chr1: 173700493-173700575

2

102

0.04

gga-mir-16-2

chr9: 23742791-23742884

1

67

0.03

gga-mir-16-1

chr1: 173700351-173700434

1

107

0.02

gga-mir-106

chr4: 3970359-3970439

0

27

+2

gga-mir-1729

chr15: 769596-769666

0

24

+

gga-mir-1798

chr20: 9654914-9655009

0

24

+

gga-mir-429

chr21: 2580812-2580895

0

22

+

gga-mir-1711

chr12: 17010140-17010207

0

18

+


Note: 1 Specifically expressed in infected lungs.

2 Specifically expressed in non-infected lungs.

Wang et al. BMC Genomics 2009 10:512   doi:10.1186/1471-2164-10-512

Open Data