Open Access Database

Fourmidable: a database for ant genomics

Yannick Wurm1*, Paolo Uva2, Frédéric Ricci1, John Wang1, Stephanie Jemielity3, Christian Iseli45, Laurent Falquet5 and Laurent Keller1

Author Affiliations

1 Department of Ecology and Evolution, Biophore, University of Lausanne, CH-1015 Lausanne, Switzerland

2 Istituto di Ricerche di Biologia Molecolare, Merck Research Laboratories, 00040 Pomezia, Rome, Italy

3 Institut for Infectious Diseases, University of Bern, CH-3010 Bern, Switzerland

4 Ludwig Institute for Cancer Research, CH-1015 Lausanne, Switzerland

5 Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland

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BMC Genomics 2009, 10:5  doi:10.1186/1471-2164-10-5

Published: 6 January 2009

Additional files

Additional file 1:

Notes on implementation. We provide several details about decisions made relative to the implementation of the database, and the assembly pipeline.

Format: RTF Size: 2KB Download file

Open Data

Additional file 2:

List of tasks parallelized on the Swiss Institute of Bioinformatics Vital-IT computing cluster. Some tasks were parallelized for increased execution speed.

Format: RTF Size: 1KB Download file

Open Data

Additional file 3:

List of software parameters that differ from default. For the assembly and annotation pipelines, default parameters were sometimes unsatisfactory. This table summarizes the parameters used when they differed from default.

Format: RTF Size: 6KB Download file

Open Data

Additional file 4:

List of data available in text format. Some of the data in Fourmidable can be downloaded in text format.

Format: RTF Size: 1KB Download file

Open Data