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Resolution: standard / high Figure 6.
CREB binding and promoter activity at a bidirectional promoter showing opposite induction
patterns in the presence of TORC1. A. CREB binding to PPP1R10/MRPS18B bidirectional promoter. Identical to Figure 4, the
log2 ratio for each probe spanning this bidirectional promoter was determined for
the CREB ChIP-chip (plotted in red) or HaloCHIP-chip (plotted in blue) data. Spacing
between probes is approximately 131 bp. Positions of transcription start sites (TSS)
are shown with arrows indicating the direction of transcription with lengths of exons
in blocks and introns drawn as lines. Positions of full CRE sites are indicated below
by blue dots. Also shown is the region of each cloned promoter fragments, indicated
by the green and blue arrows, used in the luciferase assay shown below in panel B.
The arrows indicate the direction in which the cloned fragments were tested in the
luciferase assay. B. The log2 ratio of treated/untreated luciferase activity is plotted for each promoter
fragment in each condition indicated. The MRPS18B promoter (in green) shows significant
inducible activity in the presence of TORC1 with and without FSK, while the PPP1R10
promoter (in blue) shows significant repression in the presence of TORC1 with and
without FSK.
Hartzell et al. BMC Genomics 2009 10:497 doi:10.1186/1471-2164-10-497 |