Table 4 |
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|
Overview of SNPs identified. |
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|
nt flanking sequence1 |
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|
reference2 |
Contigs |
SNPs |
40/40 |
20/20 |
2/40 |
|
|
|||||
|
c50 |
209623 |
7609 |
2254 |
5218 |
6454 |
|
c50ca |
195928 |
7930 |
2760 |
5636 |
6834 |
|
c50caB |
192731 |
11287 |
5620 |
8902 |
10125 |
|
|
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|
140/40 refers to SNPs that are flanked on both sides by at least 40 nucleotides of genomic sequence. 20/20 refers to SNPs that are flanked on both sides by at least 20 nucleotides of genomic sequence. 2/40 refers to SNPs that have at least 2 nucleotides flanking sequence on one side and at least 40 nucleotides on the other. 2c50 refers to reference genome consisting of short read contigs of 50 bp or more c50ca is extended genome assembly based on chicken alignment c50caB is extended genome assembly based on chicken alignment and turkey BES. |
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|
Kerstens et al. BMC Genomics 2009 10:479 doi:10.1186/1471-2164-10-479 |
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