Table 2

Short read assembly results.

algorithm1 and non-default parameters


edena -c 33 -m 16

velvet 152

SSAKE

contigs

230741

24

627600

assembled reads

8965681

NA

13964267

assembly length

17487533

2812

36163074

N50

90

129

53


1algorithm versions were: edena-2.1.1, velvet_0.3, SSAKE_v2.0

2parameter applies to hash_length

Kerstens et al. BMC Genomics 2009 10:479   doi:10.1186/1471-2164-10-479

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